miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29045 5' -57.9 NC_006146.1 + 73035 0.66 0.855837
Target:  5'- gCCCUCGuuccacGGCCCggggucGGCgGCCCCcUCc -3'
miRNA:   3'- gGGGAGUu-----UCGGG------UCGaCGGGGaAGu -5'
29045 5' -57.9 NC_006146.1 + 28719 0.66 0.855837
Target:  5'- uCCCCUCuGAGCCCcGUUGaaCCCa--- -3'
miRNA:   3'- -GGGGAGuUUCGGGuCGACg-GGGaagu -5'
29045 5' -57.9 NC_006146.1 + 29655 0.66 0.855837
Target:  5'- gUCCUCGAggaagaGGCCCAGUccacucaGCCCCgugUCc -3'
miRNA:   3'- gGGGAGUU------UCGGGUCGa------CGGGGa--AGu -5'
29045 5' -57.9 NC_006146.1 + 25641 0.66 0.855837
Target:  5'- uCCCCUCuGAGCCCcGUUGaaCCCa--- -3'
miRNA:   3'- -GGGGAGuUUCGGGuCGACg-GGGaagu -5'
29045 5' -57.9 NC_006146.1 + 26577 0.66 0.855837
Target:  5'- gUCCUCGAggaagaGGCCCAGUccacucaGCCCCgugUCc -3'
miRNA:   3'- gGGGAGUU------UCGGGUCGa------CGGGGa--AGu -5'
29045 5' -57.9 NC_006146.1 + 16407 0.66 0.855837
Target:  5'- uCCCCUCuGAGCCCcGUUGaaCCCa--- -3'
miRNA:   3'- -GGGGAGuUUCGGGuCGACg-GGGaagu -5'
29045 5' -57.9 NC_006146.1 + 20421 0.66 0.855837
Target:  5'- gUCCUCGAggaagaGGCCCAGUccacucaGCCCCgugUCc -3'
miRNA:   3'- gGGGAGUU------UCGGGUCGa------CGGGGa--AGu -5'
29045 5' -57.9 NC_006146.1 + 44237 0.66 0.855837
Target:  5'- uCUCCUCu-GGCCgGGCggcgguguccauUGCCCCUgCGg -3'
miRNA:   3'- -GGGGAGuuUCGGgUCG------------ACGGGGAaGU- -5'
29045 5' -57.9 NC_006146.1 + 17343 0.66 0.855837
Target:  5'- gUCCUCGAggaagaGGCCCAGUccacucaGCCCCgugUCc -3'
miRNA:   3'- gGGGAGUU------UCGGGUCGa------CGGGGa--AGu -5'
29045 5' -57.9 NC_006146.1 + 19485 0.66 0.855837
Target:  5'- uCCCCUCuGAGCCCcGUUGaaCCCa--- -3'
miRNA:   3'- -GGGGAGuUUCGGGuCGACg-GGGaagu -5'
29045 5' -57.9 NC_006146.1 + 13329 0.66 0.855837
Target:  5'- uCCCCUCuGAGCCCcGUUGaaCCCa--- -3'
miRNA:   3'- -GGGGAGuUUCGGGuCGACg-GGGaagu -5'
29045 5' -57.9 NC_006146.1 + 22563 0.66 0.855837
Target:  5'- uCCCCUCuGAGCCCcGUUGaaCCCa--- -3'
miRNA:   3'- -GGGGAGuUUCGGGuCGACg-GGGaagu -5'
29045 5' -57.9 NC_006146.1 + 23499 0.66 0.855837
Target:  5'- gUCCUCGAggaagaGGCCCAGUccacucaGCCCCgugUCc -3'
miRNA:   3'- gGGGAGUU------UCGGGUCGa------CGGGGa--AGu -5'
29045 5' -57.9 NC_006146.1 + 14265 0.66 0.855837
Target:  5'- gUCCUCGAggaagaGGCCCAGUccacucaGCCCCgugUCc -3'
miRNA:   3'- gGGGAGUU------UCGGGUCGa------CGGGGa--AGu -5'
29045 5' -57.9 NC_006146.1 + 155194 0.66 0.855837
Target:  5'- cCCCCUCuccucGgCCAGUgGCCCCg--- -3'
miRNA:   3'- -GGGGAGuuu--CgGGUCGaCGGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 129391 0.66 0.855837
Target:  5'- cCUCCUCuGGGGCCggaAGcCUGCCCCa--- -3'
miRNA:   3'- -GGGGAG-UUUCGGg--UC-GACGGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 35586 0.66 0.851198
Target:  5'- uCCCCUCAGAGCcauuCCccugggucugugggcAGCUGCCUUa--- -3'
miRNA:   3'- -GGGGAGUUUCG----GG---------------UCGACGGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 28846 0.66 0.848067
Target:  5'- aCCCCggc-AGCCCGGgUGgCCCCa--- -3'
miRNA:   3'- -GGGGaguuUCGGGUCgAC-GGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 25768 0.66 0.848067
Target:  5'- aCCCCggc-AGCCCGGgUGgCCCCa--- -3'
miRNA:   3'- -GGGGaguuUCGGGUCgAC-GGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 118882 0.66 0.848067
Target:  5'- gCCCCUCc--GCCgCGGaCUGCCUCaggUUCGa -3'
miRNA:   3'- -GGGGAGuuuCGG-GUC-GACGGGG---AAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.