miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29045 5' -57.9 NC_006146.1 + 129391 0.66 0.855837
Target:  5'- cCUCCUCuGGGGCCggaAGcCUGCCCCa--- -3'
miRNA:   3'- -GGGGAG-UUUCGGg--UC-GACGGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 23203 0.66 0.823639
Target:  5'- gCCUUCcuGGCCCuGUUGCUcauCCUUCu -3'
miRNA:   3'- gGGGAGuuUCGGGuCGACGG---GGAAGu -5'
29045 5' -57.9 NC_006146.1 + 59156 0.66 0.823639
Target:  5'- cCCgCCUCAGGGacgccaCCCAGUgUGCCaCCUUUg -3'
miRNA:   3'- -GG-GGAGUUUC------GGGUCG-ACGG-GGAAGu -5'
29045 5' -57.9 NC_006146.1 + 155194 0.66 0.855837
Target:  5'- cCCCCUCuccucGgCCAGUgGCCCCg--- -3'
miRNA:   3'- -GGGGAGuuu--CgGGUCGaCGGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 62758 0.66 0.823639
Target:  5'- gCCCUCAGGGUcuacucuaCCAGCgugugggugucUGCCCCcugUCu -3'
miRNA:   3'- gGGGAGUUUCG--------GGUCG-----------ACGGGGa--AGu -5'
29045 5' -57.9 NC_006146.1 + 44993 0.66 0.831961
Target:  5'- aCCCUUCucuccAGCUCGGUgagGCCCCa--- -3'
miRNA:   3'- -GGGGAGuu---UCGGGUCGa--CGGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 156056 0.66 0.840106
Target:  5'- cCCCCUC--GGCCUcccGCgGCCCCg--- -3'
miRNA:   3'- -GGGGAGuuUCGGGu--CGaCGGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 82088 0.66 0.84728
Target:  5'- -gCCUCA-GGCCCAGCcacaacaUGCCCag-CAg -3'
miRNA:   3'- ggGGAGUuUCGGGUCG-------ACGGGgaaGU- -5'
29045 5' -57.9 NC_006146.1 + 13456 0.66 0.848067
Target:  5'- aCCCCggc-AGCCCGGgUGgCCCCa--- -3'
miRNA:   3'- -GGGGaguuUCGGGUCgAC-GGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 137552 0.66 0.831961
Target:  5'- aCCCaccggCGGccaCCCGGCUGCCCCggagCAc -3'
miRNA:   3'- gGGGa----GUUuc-GGGUCGACGGGGaa--GU- -5'
29045 5' -57.9 NC_006146.1 + 740 0.66 0.840106
Target:  5'- cCCCCUCAGccCCCGGCcgGCgCCg--- -3'
miRNA:   3'- -GGGGAGUUucGGGUCGa-CGgGGaagu -5'
29045 5' -57.9 NC_006146.1 + 1671 0.66 0.840106
Target:  5'- cCCCCUCAGccCCCGGCcgGCgCCg--- -3'
miRNA:   3'- -GGGGAGUUucGGGUCGa-CGgGGaagu -5'
29045 5' -57.9 NC_006146.1 + 73035 0.66 0.855837
Target:  5'- gCCCUCGuuccacGGCCCggggucGGCgGCCCCcUCc -3'
miRNA:   3'- gGGGAGUu-----UCGGG------UCGaCGGGGaAGu -5'
29045 5' -57.9 NC_006146.1 + 168522 0.66 0.848067
Target:  5'- gCCCUCugGAAGCCCGcggacGcCUGUCCCggcUCGu -3'
miRNA:   3'- gGGGAG--UUUCGGGU-----C-GACGGGGa--AGU- -5'
29045 5' -57.9 NC_006146.1 + 75594 0.66 0.840106
Target:  5'- aCCCUCcgcGCCUA-CUGCCCCa--- -3'
miRNA:   3'- gGGGAGuuuCGGGUcGACGGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 4227 0.66 0.840106
Target:  5'- cCCCCUgCcAGGCCaCAccGCUcCCCCUUCc -3'
miRNA:   3'- -GGGGA-GuUUCGG-GU--CGAcGGGGAAGu -5'
29045 5' -57.9 NC_006146.1 + 136653 0.66 0.840106
Target:  5'- aCCCC-CAGccGGCCCGGC-GUCCUUgCGg -3'
miRNA:   3'- -GGGGaGUU--UCGGGUCGaCGGGGAaGU- -5'
29045 5' -57.9 NC_006146.1 + 32823 0.66 0.840106
Target:  5'- aCCCC-CAGccGGCCCGGC-GUCCUUgCGg -3'
miRNA:   3'- -GGGGaGUU--UCGGGUCGaCGGGGAaGU- -5'
29045 5' -57.9 NC_006146.1 + 3535 0.66 0.840106
Target:  5'- cCCCCUCAGccCCCGGCcgGCgCCg--- -3'
miRNA:   3'- -GGGGAGUUucGGGUCGa-CGgGGaagu -5'
29045 5' -57.9 NC_006146.1 + 2603 0.66 0.840106
Target:  5'- cCCCCUCAGccCCCGGCcgGCgCCg--- -3'
miRNA:   3'- -GGGGAGUUucGGGUCGa-CGgGGaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.