Results 21 - 40 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29045 | 5' | -57.9 | NC_006146.1 | + | 16534 | 0.66 | 0.848067 |
Target: 5'- aCCCCggc-AGCCCGGgUGgCCCCa--- -3' miRNA: 3'- -GGGGaguuUCGGGUCgAC-GGGGaagu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 19612 | 0.66 | 0.848067 |
Target: 5'- aCCCCggc-AGCCCGGgUGgCCCCa--- -3' miRNA: 3'- -GGGGaguuUCGGGUCgAC-GGGGaagu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 25768 | 0.66 | 0.848067 |
Target: 5'- aCCCCggc-AGCCCGGgUGgCCCCa--- -3' miRNA: 3'- -GGGGaguuUCGGGUCgAC-GGGGaagu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 168522 | 0.66 | 0.848067 |
Target: 5'- gCCCUCugGAAGCCCGcggacGcCUGUCCCggcUCGu -3' miRNA: 3'- gGGGAG--UUUCGGGU-----C-GACGGGGa--AGU- -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 28846 | 0.66 | 0.848067 |
Target: 5'- aCCCCggc-AGCCCGGgUGgCCCCa--- -3' miRNA: 3'- -GGGGaguuUCGGGUCgAC-GGGGaagu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 82088 | 0.66 | 0.84728 |
Target: 5'- -gCCUCA-GGCCCAGCcacaacaUGCCCag-CAg -3' miRNA: 3'- ggGGAGUuUCGGGUCG-------ACGGGgaaGU- -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 136653 | 0.66 | 0.840106 |
Target: 5'- aCCCC-CAGccGGCCCGGC-GUCCUUgCGg -3' miRNA: 3'- -GGGGaGUU--UCGGGUCGaCGGGGAaGU- -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 32823 | 0.66 | 0.840106 |
Target: 5'- aCCCC-CAGccGGCCCGGC-GUCCUUgCGg -3' miRNA: 3'- -GGGGaGUU--UCGGGUCGaCGGGGAaGU- -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 3535 | 0.66 | 0.840106 |
Target: 5'- cCCCCUCAGccCCCGGCcgGCgCCg--- -3' miRNA: 3'- -GGGGAGUUucGGGUCGa-CGgGGaagu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 4227 | 0.66 | 0.840106 |
Target: 5'- cCCCCUgCcAGGCCaCAccGCUcCCCCUUCc -3' miRNA: 3'- -GGGGA-GuUUCGG-GU--CGAcGGGGAAGu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 1671 | 0.66 | 0.840106 |
Target: 5'- cCCCCUCAGccCCCGGCcgGCgCCg--- -3' miRNA: 3'- -GGGGAGUUucGGGUCGa-CGgGGaagu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 156056 | 0.66 | 0.840106 |
Target: 5'- cCCCCUC--GGCCUcccGCgGCCCCg--- -3' miRNA: 3'- -GGGGAGuuUCGGGu--CGaCGGGGaagu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 740 | 0.66 | 0.840106 |
Target: 5'- cCCCCUCAGccCCCGGCcgGCgCCg--- -3' miRNA: 3'- -GGGGAGUUucGGGUCGa-CGgGGaagu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 75594 | 0.66 | 0.840106 |
Target: 5'- aCCCUCcgcGCCUA-CUGCCCCa--- -3' miRNA: 3'- gGGGAGuuuCGGGUcGACGGGGaagu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 2603 | 0.66 | 0.840106 |
Target: 5'- cCCCCUCAGccCCCGGCcgGCgCCg--- -3' miRNA: 3'- -GGGGAGUUucGGGUCGa-CGgGGaagu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 137552 | 0.66 | 0.831961 |
Target: 5'- aCCCaccggCGGccaCCCGGCUGCCCCggagCAc -3' miRNA: 3'- gGGGa----GUUuc-GGGUCGACGGGGaa--GU- -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 44993 | 0.66 | 0.831961 |
Target: 5'- aCCCUUCucuccAGCUCGGUgagGCCCCa--- -3' miRNA: 3'- -GGGGAGuu---UCGGGUCGa--CGGGGaagu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 59156 | 0.66 | 0.823639 |
Target: 5'- cCCgCCUCAGGGacgccaCCCAGUgUGCCaCCUUUg -3' miRNA: 3'- -GG-GGAGUUUC------GGGUCG-ACGG-GGAAGu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 23203 | 0.66 | 0.823639 |
Target: 5'- gCCUUCcuGGCCCuGUUGCUcauCCUUCu -3' miRNA: 3'- gGGGAGuuUCGGGuCGACGG---GGAAGu -5' |
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29045 | 5' | -57.9 | NC_006146.1 | + | 62758 | 0.66 | 0.823639 |
Target: 5'- gCCCUCAGGGUcuacucuaCCAGCgugugggugucUGCCCCcugUCu -3' miRNA: 3'- gGGGAGUUUCG--------GGUCG-----------ACGGGGa--AGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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