miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29045 5' -57.9 NC_006146.1 + 84451 1.1 0.001614
Target:  5'- cCCCCUCAAAGCCCAGCUGCCCCUUCAa -3'
miRNA:   3'- -GGGGAGUUUCGGGUCGACGGGGAAGU- -5'
29045 5' -57.9 NC_006146.1 + 66684 0.73 0.448022
Target:  5'- aCCCg-GAAGCCCAGCUuCCCCgugCAg -3'
miRNA:   3'- gGGGagUUUCGGGUCGAcGGGGaa-GU- -5'
29045 5' -57.9 NC_006146.1 + 142080 0.73 0.479225
Target:  5'- aCCCUCuccacugaaacacggAAAGCUgGGCUGCCCCa--- -3'
miRNA:   3'- gGGGAG---------------UUUCGGgUCGACGGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 155194 0.66 0.855837
Target:  5'- cCCCCUCuccucGgCCAGUgGCCCCg--- -3'
miRNA:   3'- -GGGGAGuuu--CgGGUCGaCGGGGaagu -5'
29045 5' -57.9 NC_006146.1 + 84362 0.94 0.021739
Target:  5'- gCCCCUC-AAGCCCAGCUGCCCCU-CAa -3'
miRNA:   3'- -GGGGAGuUUCGGGUCGACGGGGAaGU- -5'
29045 5' -57.9 NC_006146.1 + 13374 0.81 0.16667
Target:  5'- gCCCUCGGGGCCCAGg-GCCCCUa-- -3'
miRNA:   3'- gGGGAGUUUCGGGUCgaCGGGGAagu -5'
29045 5' -57.9 NC_006146.1 + 19530 0.81 0.16667
Target:  5'- gCCCUCGGGGCCCAGg-GCCCCUa-- -3'
miRNA:   3'- gGGGAGUUUCGGGUCgaCGGGGAagu -5'
29045 5' -57.9 NC_006146.1 + 22608 0.81 0.16667
Target:  5'- gCCCUCGGGGCCCAGg-GCCCCUa-- -3'
miRNA:   3'- gGGGAGUUUCGGGUCgaCGGGGAagu -5'
29045 5' -57.9 NC_006146.1 + 66204 0.78 0.22395
Target:  5'- aCCCaggcgacgagaUCcAGGCCCAGCUGCCCCUcuaUCGc -3'
miRNA:   3'- gGGG-----------AGuUUCGGGUCGACGGGGA---AGU- -5'
29045 5' -57.9 NC_006146.1 + 155855 0.74 0.404269
Target:  5'- cCUCCUCGcAGGCCCGGCggGCCCUggcCAg -3'
miRNA:   3'- -GGGGAGU-UUCGGGUCGa-CGGGGaa-GU- -5'
29045 5' -57.9 NC_006146.1 + 24920 0.75 0.355475
Target:  5'- gCCCUCGAGGCCUcacagcccaGGCcagGCCCCUUa- -3'
miRNA:   3'- gGGGAGUUUCGGG---------UCGa--CGGGGAAgu -5'
29045 5' -57.9 NC_006146.1 + 28764 0.81 0.16667
Target:  5'- gCCCUCGGGGCCCAGg-GCCCCUa-- -3'
miRNA:   3'- gGGGAGUUUCGGGUCgaCGGGGAagu -5'
29045 5' -57.9 NC_006146.1 + 84413 1.01 0.006539
Target:  5'- gCCCCUCAAGGCCCAGCUGCCCCU-CAa -3'
miRNA:   3'- -GGGGAGUUUCGGGUCGACGGGGAaGU- -5'
29045 5' -57.9 NC_006146.1 + 161946 0.75 0.355475
Target:  5'- aCCCUgGGAGaCCCGGCUuCCCUUUCGg -3'
miRNA:   3'- gGGGAgUUUC-GGGUCGAcGGGGAAGU- -5'
29045 5' -57.9 NC_006146.1 + 84294 0.94 0.021739
Target:  5'- gCCCCUC-AAGCCCAGCUGCCCCU-CAa -3'
miRNA:   3'- -GGGGAGuUUCGGGUCGACGGGGAaGU- -5'
29045 5' -57.9 NC_006146.1 + 25686 0.81 0.16667
Target:  5'- gCCCUCGGGGCCCAGg-GCCCCUa-- -3'
miRNA:   3'- gGGGAGUUUCGGGUCgaCGGGGAagu -5'
29045 5' -57.9 NC_006146.1 + 157773 0.74 0.379347
Target:  5'- uCUCCUCGuGGGCCCGGgaGCCCCcgUCc -3'
miRNA:   3'- -GGGGAGU-UUCGGGUCgaCGGGGa-AGu -5'
29045 5' -57.9 NC_006146.1 + 115233 0.73 0.466244
Target:  5'- aCCCagGGAGCCCAGCUgagagGCCCagggaUUCAc -3'
miRNA:   3'- gGGGagUUUCGGGUCGA-----CGGGg----AAGU- -5'
29045 5' -57.9 NC_006146.1 + 84328 0.94 0.021739
Target:  5'- gCCCCUC-AAGCCCAGCUGCCCCU-CAa -3'
miRNA:   3'- -GGGGAGuUUCGGGUCGACGGGGAaGU- -5'
29045 5' -57.9 NC_006146.1 + 16452 0.81 0.16667
Target:  5'- gCCCUCGGGGCCCAGg-GCCCCUa-- -3'
miRNA:   3'- gGGGAGUUUCGGGUCgaCGGGGAagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.