miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 3' -57.4 NC_006146.1 + 124471 0.66 0.869141
Target:  5'- cGCCuUCCUGGGGGCCCccUCgUUCUa -3'
miRNA:   3'- cCGGuAGGGUCUCCGGGa-AGaAGGAa -5'
29046 3' -57.4 NC_006146.1 + 3309 0.66 0.869141
Target:  5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3'
miRNA:   3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 2377 0.66 0.869141
Target:  5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3'
miRNA:   3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 1445 0.66 0.869141
Target:  5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3'
miRNA:   3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 514 0.66 0.869141
Target:  5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3'
miRNA:   3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 49563 0.66 0.869141
Target:  5'- cGGCCAggCCCAGcauGGCCUcgaugUCcUCCa- -3'
miRNA:   3'- -CCGGUa-GGGUCu--CCGGGa----AGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 80337 0.66 0.861657
Target:  5'- gGGCCuucUCCCGGgucuucucccGGGCCCUgc-UCCa- -3'
miRNA:   3'- -CCGGu--AGGGUC----------UCCGGGAagaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 162282 0.66 0.861657
Target:  5'- gGGCgAggacaCCCAGGGGCCgUcgagUCUUUCUg -3'
miRNA:   3'- -CCGgUa----GGGUCUCCGGgA----AGAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 111240 0.66 0.861657
Target:  5'- cGCCAaaaggCCCGGuuuGGCCUgagcgCUUCCUc -3'
miRNA:   3'- cCGGUa----GGGUCu--CCGGGaa---GAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 114225 0.66 0.861657
Target:  5'- gGGCCAgCCCcaGGGGGCCCggca-CCUc -3'
miRNA:   3'- -CCGGUaGGG--UCUCCGGGaagaaGGAa -5'
29046 3' -57.4 NC_006146.1 + 140689 0.66 0.846076
Target:  5'- cGGCCAgCCCGGcgggcgcagcGGCCCUcugCUgUCCUUg -3'
miRNA:   3'- -CCGGUaGGGUCu---------CCGGGAa--GA-AGGAA- -5'
29046 3' -57.4 NC_006146.1 + 56261 0.66 0.845277
Target:  5'- gGGCCGUCCUcggcggggagcgaGGAGGCCaggacgUCCa- -3'
miRNA:   3'- -CCGGUAGGG-------------UCUCCGGgaaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 53315 0.66 0.837993
Target:  5'- uGGCCGgaguccgagCCCgaGGAGGCCCggCggCCg- -3'
miRNA:   3'- -CCGGUa--------GGG--UCUCCGGGaaGaaGGaa -5'
29046 3' -57.4 NC_006146.1 + 118509 0.66 0.829724
Target:  5'- gGGCCAUCaucaucgagaCGGAcGGCuCCUUCUaCCUc -3'
miRNA:   3'- -CCGGUAGg---------GUCU-CCG-GGAAGAaGGAa -5'
29046 3' -57.4 NC_006146.1 + 55824 0.66 0.828049
Target:  5'- aGGCCGUCCCGGccuggguGGGCggaauguucgcccCCUUCcccUCCUc -3'
miRNA:   3'- -CCGGUAGGGUC-------UCCG-------------GGAAGa--AGGAa -5'
29046 3' -57.4 NC_006146.1 + 2280 0.67 0.812659
Target:  5'- uGGCUuugagGUCaCCGGAgccaGGCCCUcCUUCCg- -3'
miRNA:   3'- -CCGG-----UAG-GGUCU----CCGGGAaGAAGGaa -5'
29046 3' -57.4 NC_006146.1 + 102571 0.67 0.810041
Target:  5'- aGGCCGUCCUcGAcgccauccucucgcGGCCCgaggagggCUUCCg- -3'
miRNA:   3'- -CCGGUAGGGuCU--------------CCGGGaa------GAAGGaa -5'
29046 3' -57.4 NC_006146.1 + 62848 0.67 0.803878
Target:  5'- uGGCCAggCCGGAGGUUCU-CUUCa-- -3'
miRNA:   3'- -CCGGUagGGUCUCCGGGAaGAAGgaa -5'
29046 3' -57.4 NC_006146.1 + 123589 0.67 0.794942
Target:  5'- aGGCCAUCauCCAgGAGGCCCgggaggagUCCc- -3'
miRNA:   3'- -CCGGUAG--GGU-CUCCGGGaaga----AGGaa -5'
29046 3' -57.4 NC_006146.1 + 131109 0.67 0.792232
Target:  5'- cGCCGUCCCAGAagccgggagcuccgGGCCCaag--CCUg -3'
miRNA:   3'- cCGGUAGGGUCU--------------CCGGGaagaaGGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.