Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29046 | 3' | -57.4 | NC_006146.1 | + | 131109 | 0.67 | 0.792232 |
Target: 5'- cGCCGUCCCAGAagccgggagcuccgGGCCCaag--CCUg -3' miRNA: 3'- cCGGUAGGGUCU--------------CCGGGaagaaGGAa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 97469 | 0.68 | 0.7288 |
Target: 5'- uGUCAUCCggugccaAGGGGCCCggccuUUCUUCCUc -3' miRNA: 3'- cCGGUAGGg------UCUCCGGG-----AAGAAGGAa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 126349 | 0.68 | 0.74825 |
Target: 5'- aGCCA-CCCGGAgccccGGCCCcUUUUCCa- -3' miRNA: 3'- cCGGUaGGGUCU-----CCGGGaAGAAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 5447 | 0.68 | 0.757827 |
Target: 5'- uGGCCuUCCUAcuGGCCauagUCUUCCUg -3' miRNA: 3'- -CCGGuAGGGUcuCCGGga--AGAAGGAa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 51036 | 0.69 | 0.709019 |
Target: 5'- aGGCCGgaUCCCacGGAGGCaUCUUCUcCCg- -3' miRNA: 3'- -CCGGU--AGGG--UCUCCG-GGAAGAaGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 128062 | 0.69 | 0.709019 |
Target: 5'- gGGCCuggcggCCCucGAGGCCCUga-UCCUg -3' miRNA: 3'- -CCGGua----GGGu-CUCCGGGAagaAGGAa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 61926 | 0.69 | 0.708023 |
Target: 5'- gGGCCAUCaggggcuCCAG-GGCCCUgg-UCCa- -3' miRNA: 3'- -CCGGUAG-------GGUCuCCGGGAagaAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 39157 | 0.7 | 0.648404 |
Target: 5'- uGGCCGgguccUCCCAGcAGGUCCgugUCUcUCCa- -3' miRNA: 3'- -CCGGU-----AGGGUC-UCCGGGa--AGA-AGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 52990 | 0.7 | 0.648404 |
Target: 5'- cGGgCGUCUC-GAGGCCCcUCUUCUg- -3' miRNA: 3'- -CCgGUAGGGuCUCCGGGaAGAAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 28119 | 0.7 | 0.632086 |
Target: 5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3' miRNA: 3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 137977 | 0.7 | 0.648404 |
Target: 5'- gGGCC-UCCCGGGGGCCCggCg----- -3' miRNA: 3'- -CCGGuAGGGUCUCCGGGaaGaaggaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 25041 | 0.7 | 0.632086 |
Target: 5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3' miRNA: 3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 21963 | 0.7 | 0.632086 |
Target: 5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3' miRNA: 3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 18886 | 0.7 | 0.632086 |
Target: 5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3' miRNA: 3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 15808 | 0.7 | 0.632086 |
Target: 5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3' miRNA: 3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 12729 | 0.7 | 0.632086 |
Target: 5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3' miRNA: 3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 108464 | 0.7 | 0.617807 |
Target: 5'- aGGuCCAcuagCCCGGAGGCCgCUUCagCCa- -3' miRNA: 3'- -CC-GGUa---GGGUCUCCGG-GAAGaaGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 108497 | 0.7 | 0.648404 |
Target: 5'- uGGCC-UCCgAcGAGGUCCU-CUUCCUc -3' miRNA: 3'- -CCGGuAGGgU-CUCCGGGAaGAAGGAa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 81218 | 0.7 | 0.638207 |
Target: 5'- aGGCCGUUCCccGGGCCC--CUUCCg- -3' miRNA: 3'- -CCGGUAGGGucUCCGGGaaGAAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 20902 | 0.7 | 0.617807 |
Target: 5'- aGGCCuUCgUGGAGGCCCUgagUCCg- -3' miRNA: 3'- -CCGGuAGgGUCUCCGGGAagaAGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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