miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 3' -57.4 NC_006146.1 + 108497 0.7 0.648404
Target:  5'- uGGCC-UCCgAcGAGGUCCU-CUUCCUc -3'
miRNA:   3'- -CCGGuAGGgU-CUCCGGGAaGAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 137977 0.7 0.648404
Target:  5'- gGGCC-UCCCGGGGGCCCggCg----- -3'
miRNA:   3'- -CCGGuAGGGUCUCCGGGaaGaaggaa -5'
29046 3' -57.4 NC_006146.1 + 52990 0.7 0.648404
Target:  5'- cGGgCGUCUC-GAGGCCCcUCUUCUg- -3'
miRNA:   3'- -CCgGUAGGGuCUCCGGGaAGAAGGaa -5'
29046 3' -57.4 NC_006146.1 + 39157 0.7 0.648404
Target:  5'- uGGCCGgguccUCCCAGcAGGUCCgugUCUcUCCa- -3'
miRNA:   3'- -CCGGU-----AGGGUC-UCCGGGa--AGA-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 61926 0.69 0.708023
Target:  5'- gGGCCAUCaggggcuCCAG-GGCCCUgg-UCCa- -3'
miRNA:   3'- -CCGGUAG-------GGUCuCCGGGAagaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 128062 0.69 0.709019
Target:  5'- gGGCCuggcggCCCucGAGGCCCUga-UCCUg -3'
miRNA:   3'- -CCGGua----GGGu-CUCCGGGAagaAGGAa -5'
29046 3' -57.4 NC_006146.1 + 51036 0.69 0.709019
Target:  5'- aGGCCGgaUCCCacGGAGGCaUCUUCUcCCg- -3'
miRNA:   3'- -CCGGU--AGGG--UCUCCG-GGAAGAaGGaa -5'
29046 3' -57.4 NC_006146.1 + 97469 0.68 0.7288
Target:  5'- uGUCAUCCggugccaAGGGGCCCggccuUUCUUCCUc -3'
miRNA:   3'- cCGGUAGGg------UCUCCGGG-----AAGAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 126349 0.68 0.74825
Target:  5'- aGCCA-CCCGGAgccccGGCCCcUUUUCCa- -3'
miRNA:   3'- cCGGUaGGGUCU-----CCGGGaAGAAGGaa -5'
29046 3' -57.4 NC_006146.1 + 5447 0.68 0.757827
Target:  5'- uGGCCuUCCUAcuGGCCauagUCUUCCUg -3'
miRNA:   3'- -CCGGuAGGGUcuCCGGga--AGAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 167649 0.67 0.776642
Target:  5'- cGGCgCGUgCCGGGGGCCCgggggCgugUCCc- -3'
miRNA:   3'- -CCG-GUAgGGUCUCCGGGaa---Ga--AGGaa -5'
29046 3' -57.4 NC_006146.1 + 131109 0.67 0.792232
Target:  5'- cGCCGUCCCAGAagccgggagcuccgGGCCCaag--CCUg -3'
miRNA:   3'- cCGGUAGGGUCU--------------CCGGGaagaaGGAa -5'
29046 3' -57.4 NC_006146.1 + 123589 0.67 0.794942
Target:  5'- aGGCCAUCauCCAgGAGGCCCgggaggagUCCc- -3'
miRNA:   3'- -CCGGUAG--GGU-CUCCGGGaaga----AGGaa -5'
29046 3' -57.4 NC_006146.1 + 62848 0.67 0.803878
Target:  5'- uGGCCAggCCGGAGGUUCU-CUUCa-- -3'
miRNA:   3'- -CCGGUagGGUCUCCGGGAaGAAGgaa -5'
29046 3' -57.4 NC_006146.1 + 102571 0.67 0.810041
Target:  5'- aGGCCGUCCUcGAcgccauccucucgcGGCCCgaggagggCUUCCg- -3'
miRNA:   3'- -CCGGUAGGGuCU--------------CCGGGaa------GAAGGaa -5'
29046 3' -57.4 NC_006146.1 + 2280 0.67 0.812659
Target:  5'- uGGCUuugagGUCaCCGGAgccaGGCCCUcCUUCCg- -3'
miRNA:   3'- -CCGG-----UAG-GGUCU----CCGGGAaGAAGGaa -5'
29046 3' -57.4 NC_006146.1 + 55824 0.66 0.828049
Target:  5'- aGGCCGUCCCGGccuggguGGGCggaauguucgcccCCUUCcccUCCUc -3'
miRNA:   3'- -CCGGUAGGGUC-------UCCG-------------GGAAGa--AGGAa -5'
29046 3' -57.4 NC_006146.1 + 118509 0.66 0.829724
Target:  5'- gGGCCAUCaucaucgagaCGGAcGGCuCCUUCUaCCUc -3'
miRNA:   3'- -CCGGUAGg---------GUCU-CCG-GGAAGAaGGAa -5'
29046 3' -57.4 NC_006146.1 + 53315 0.66 0.837993
Target:  5'- uGGCCGgaguccgagCCCgaGGAGGCCCggCggCCg- -3'
miRNA:   3'- -CCGGUa--------GGG--UCUCCGGGaaGaaGGaa -5'
29046 3' -57.4 NC_006146.1 + 56261 0.66 0.845277
Target:  5'- gGGCCGUCCUcggcggggagcgaGGAGGCCaggacgUCCa- -3'
miRNA:   3'- -CCGGUAGGG-------------UCUCCGGgaaga-AGGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.