miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 3' -57.4 NC_006146.1 + 140689 0.66 0.846076
Target:  5'- cGGCCAgCCCGGcgggcgcagcGGCCCUcugCUgUCCUUg -3'
miRNA:   3'- -CCGGUaGGGUCu---------CCGGGAa--GA-AGGAA- -5'
29046 3' -57.4 NC_006146.1 + 111240 0.66 0.861657
Target:  5'- cGCCAaaaggCCCGGuuuGGCCUgagcgCUUCCUc -3'
miRNA:   3'- cCGGUa----GGGUCu--CCGGGaa---GAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 80337 0.66 0.861657
Target:  5'- gGGCCuucUCCCGGgucuucucccGGGCCCUgc-UCCa- -3'
miRNA:   3'- -CCGGu--AGGGUC----------UCCGGGAagaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 114225 0.66 0.861657
Target:  5'- gGGCCAgCCCcaGGGGGCCCggca-CCUc -3'
miRNA:   3'- -CCGGUaGGG--UCUCCGGGaagaaGGAa -5'
29046 3' -57.4 NC_006146.1 + 162282 0.66 0.861657
Target:  5'- gGGCgAggacaCCCAGGGGCCgUcgagUCUUUCUg -3'
miRNA:   3'- -CCGgUa----GGGUCUCCGGgA----AGAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 3309 0.66 0.869141
Target:  5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3'
miRNA:   3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 2377 0.66 0.869141
Target:  5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3'
miRNA:   3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 1445 0.66 0.869141
Target:  5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3'
miRNA:   3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 514 0.66 0.869141
Target:  5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3'
miRNA:   3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 124471 0.66 0.869141
Target:  5'- cGCCuUCCUGGGGGCCCccUCgUUCUa -3'
miRNA:   3'- cCGGuAGGGUCUCCGGGa-AGaAGGAa -5'
29046 3' -57.4 NC_006146.1 + 49563 0.66 0.869141
Target:  5'- cGGCCAggCCCAGcauGGCCUcgaugUCcUCCa- -3'
miRNA:   3'- -CCGGUa-GGGUCu--CCGGGa----AGaAGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.