miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 3' -57.4 NC_006146.1 + 108464 0.7 0.617807
Target:  5'- aGGuCCAcuagCCCGGAGGCCgCUUCagCCa- -3'
miRNA:   3'- -CC-GGUa---GGGUCUCCGG-GAAGaaGGaa -5'
29046 3' -57.4 NC_006146.1 + 13592 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 16670 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 19748 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 22826 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 25904 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 28981 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 138878 0.72 0.527344
Target:  5'- gGGCCAgcgccucgUCCC-GAGGCCCcUCUgUCCUc -3'
miRNA:   3'- -CCGGU--------AGGGuCUCCGGGaAGA-AGGAa -5'
29046 3' -57.4 NC_006146.1 + 107777 0.72 0.507843
Target:  5'- uGGCCAgcggUCCCAGGGGCaCCUgcgcagggUCU-CCUUc -3'
miRNA:   3'- -CCGGU----AGGGUCUCCG-GGA--------AGAaGGAA- -5'
29046 3' -57.4 NC_006146.1 + 116668 0.74 0.398467
Target:  5'- gGGCCG-CCCAGAGGCUCUgCUcCCg- -3'
miRNA:   3'- -CCGGUaGGGUCUCCGGGAaGAaGGaa -5'
29046 3' -57.4 NC_006146.1 + 85778 1.07 0.002763
Target:  5'- cGGCCAUCCCAGAGGCCCUUCUUCCUUu -3'
miRNA:   3'- -CCGGUAGGGUCUCCGGGAAGAAGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.