miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 3' -57.4 NC_006146.1 + 514 0.66 0.869141
Target:  5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3'
miRNA:   3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 1445 0.66 0.869141
Target:  5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3'
miRNA:   3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 2280 0.67 0.812659
Target:  5'- uGGCUuugagGUCaCCGGAgccaGGCCCUcCUUCCg- -3'
miRNA:   3'- -CCGG-----UAG-GGUCU----CCGGGAaGAAGGaa -5'
29046 3' -57.4 NC_006146.1 + 2377 0.66 0.869141
Target:  5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3'
miRNA:   3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 3309 0.66 0.869141
Target:  5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3'
miRNA:   3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 5447 0.68 0.757827
Target:  5'- uGGCCuUCCUAcuGGCCauagUCUUCCUg -3'
miRNA:   3'- -CCGGuAGGGUcuCCGGga--AGAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 12729 0.7 0.632086
Target:  5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3'
miRNA:   3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5'
29046 3' -57.4 NC_006146.1 + 13592 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 15808 0.7 0.632086
Target:  5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3'
miRNA:   3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5'
29046 3' -57.4 NC_006146.1 + 16670 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 18886 0.7 0.632086
Target:  5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3'
miRNA:   3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5'
29046 3' -57.4 NC_006146.1 + 19748 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 20902 0.7 0.617807
Target:  5'- aGGCCuUCgUGGAGGCCCUgagUCCg- -3'
miRNA:   3'- -CCGGuAGgGUCUCCGGGAagaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 21963 0.7 0.632086
Target:  5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3'
miRNA:   3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5'
29046 3' -57.4 NC_006146.1 + 22826 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 25041 0.7 0.632086
Target:  5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3'
miRNA:   3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5'
29046 3' -57.4 NC_006146.1 + 25904 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 28119 0.7 0.632086
Target:  5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3'
miRNA:   3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5'
29046 3' -57.4 NC_006146.1 + 28981 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 39157 0.7 0.648404
Target:  5'- uGGCCGgguccUCCCAGcAGGUCCgugUCUcUCCa- -3'
miRNA:   3'- -CCGGU-----AGGGUC-UCCGGGa--AGA-AGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.