miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 3' -57.4 NC_006146.1 + 118509 0.66 0.829724
Target:  5'- gGGCCAUCaucaucgagaCGGAcGGCuCCUUCUaCCUc -3'
miRNA:   3'- -CCGGUAGg---------GUCU-CCG-GGAAGAaGGAa -5'
29046 3' -57.4 NC_006146.1 + 123589 0.67 0.794942
Target:  5'- aGGCCAUCauCCAgGAGGCCCgggaggagUCCc- -3'
miRNA:   3'- -CCGGUAG--GGU-CUCCGGGaaga----AGGaa -5'
29046 3' -57.4 NC_006146.1 + 124471 0.66 0.869141
Target:  5'- cGCCuUCCUGGGGGCCCccUCgUUCUa -3'
miRNA:   3'- cCGGuAGGGUCUCCGGGa-AGaAGGAa -5'
29046 3' -57.4 NC_006146.1 + 126349 0.68 0.74825
Target:  5'- aGCCA-CCCGGAgccccGGCCCcUUUUCCa- -3'
miRNA:   3'- cCGGUaGGGUCU-----CCGGGaAGAAGGaa -5'
29046 3' -57.4 NC_006146.1 + 128062 0.69 0.709019
Target:  5'- gGGCCuggcggCCCucGAGGCCCUga-UCCUg -3'
miRNA:   3'- -CCGGua----GGGu-CUCCGGGAagaAGGAa -5'
29046 3' -57.4 NC_006146.1 + 131109 0.67 0.792232
Target:  5'- cGCCGUCCCAGAagccgggagcuccgGGCCCaag--CCUg -3'
miRNA:   3'- cCGGUAGGGUCU--------------CCGGGaagaaGGAa -5'
29046 3' -57.4 NC_006146.1 + 137977 0.7 0.648404
Target:  5'- gGGCC-UCCCGGGGGCCCggCg----- -3'
miRNA:   3'- -CCGGuAGGGUCUCCGGGaaGaaggaa -5'
29046 3' -57.4 NC_006146.1 + 138878 0.72 0.527344
Target:  5'- gGGCCAgcgccucgUCCC-GAGGCCCcUCUgUCCUc -3'
miRNA:   3'- -CCGGU--------AGGGuCUCCGGGaAGA-AGGAa -5'
29046 3' -57.4 NC_006146.1 + 140689 0.66 0.846076
Target:  5'- cGGCCAgCCCGGcgggcgcagcGGCCCUcugCUgUCCUUg -3'
miRNA:   3'- -CCGGUaGGGUCu---------CCGGGAa--GA-AGGAA- -5'
29046 3' -57.4 NC_006146.1 + 162282 0.66 0.861657
Target:  5'- gGGCgAggacaCCCAGGGGCCgUcgagUCUUUCUg -3'
miRNA:   3'- -CCGgUa----GGGUCUCCGGgA----AGAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 167649 0.67 0.776642
Target:  5'- cGGCgCGUgCCGGGGGCCCgggggCgugUCCc- -3'
miRNA:   3'- -CCG-GUAgGGUCUCCGGGaa---Ga--AGGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.