miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 3' -57.4 NC_006146.1 + 167649 0.67 0.776642
Target:  5'- cGGCgCGUgCCGGGGGCCCgggggCgugUCCc- -3'
miRNA:   3'- -CCG-GUAgGGUCUCCGGGaa---Ga--AGGaa -5'
29046 3' -57.4 NC_006146.1 + 162282 0.66 0.861657
Target:  5'- gGGCgAggacaCCCAGGGGCCgUcgagUCUUUCUg -3'
miRNA:   3'- -CCGgUa----GGGUCUCCGGgA----AGAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 140689 0.66 0.846076
Target:  5'- cGGCCAgCCCGGcgggcgcagcGGCCCUcugCUgUCCUUg -3'
miRNA:   3'- -CCGGUaGGGUCu---------CCGGGAa--GA-AGGAA- -5'
29046 3' -57.4 NC_006146.1 + 138878 0.72 0.527344
Target:  5'- gGGCCAgcgccucgUCCC-GAGGCCCcUCUgUCCUc -3'
miRNA:   3'- -CCGGU--------AGGGuCUCCGGGaAGA-AGGAa -5'
29046 3' -57.4 NC_006146.1 + 137977 0.7 0.648404
Target:  5'- gGGCC-UCCCGGGGGCCCggCg----- -3'
miRNA:   3'- -CCGGuAGGGUCUCCGGGaaGaaggaa -5'
29046 3' -57.4 NC_006146.1 + 131109 0.67 0.792232
Target:  5'- cGCCGUCCCAGAagccgggagcuccgGGCCCaag--CCUg -3'
miRNA:   3'- cCGGUAGGGUCU--------------CCGGGaagaaGGAa -5'
29046 3' -57.4 NC_006146.1 + 128062 0.69 0.709019
Target:  5'- gGGCCuggcggCCCucGAGGCCCUga-UCCUg -3'
miRNA:   3'- -CCGGua----GGGu-CUCCGGGAagaAGGAa -5'
29046 3' -57.4 NC_006146.1 + 126349 0.68 0.74825
Target:  5'- aGCCA-CCCGGAgccccGGCCCcUUUUCCa- -3'
miRNA:   3'- cCGGUaGGGUCU-----CCGGGaAGAAGGaa -5'
29046 3' -57.4 NC_006146.1 + 124471 0.66 0.869141
Target:  5'- cGCCuUCCUGGGGGCCCccUCgUUCUa -3'
miRNA:   3'- cCGGuAGGGUCUCCGGGa-AGaAGGAa -5'
29046 3' -57.4 NC_006146.1 + 123589 0.67 0.794942
Target:  5'- aGGCCAUCauCCAgGAGGCCCgggaggagUCCc- -3'
miRNA:   3'- -CCGGUAG--GGU-CUCCGGGaaga----AGGaa -5'
29046 3' -57.4 NC_006146.1 + 118509 0.66 0.829724
Target:  5'- gGGCCAUCaucaucgagaCGGAcGGCuCCUUCUaCCUc -3'
miRNA:   3'- -CCGGUAGg---------GUCU-CCG-GGAAGAaGGAa -5'
29046 3' -57.4 NC_006146.1 + 116668 0.74 0.398467
Target:  5'- gGGCCG-CCCAGAGGCUCUgCUcCCg- -3'
miRNA:   3'- -CCGGUaGGGUCUCCGGGAaGAaGGaa -5'
29046 3' -57.4 NC_006146.1 + 114225 0.66 0.861657
Target:  5'- gGGCCAgCCCcaGGGGGCCCggca-CCUc -3'
miRNA:   3'- -CCGGUaGGG--UCUCCGGGaagaaGGAa -5'
29046 3' -57.4 NC_006146.1 + 111240 0.66 0.861657
Target:  5'- cGCCAaaaggCCCGGuuuGGCCUgagcgCUUCCUc -3'
miRNA:   3'- cCGGUa----GGGUCu--CCGGGaa---GAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 108497 0.7 0.648404
Target:  5'- uGGCC-UCCgAcGAGGUCCU-CUUCCUc -3'
miRNA:   3'- -CCGGuAGGgU-CUCCGGGAaGAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 108464 0.7 0.617807
Target:  5'- aGGuCCAcuagCCCGGAGGCCgCUUCagCCa- -3'
miRNA:   3'- -CC-GGUa---GGGUCUCCGG-GAAGaaGGaa -5'
29046 3' -57.4 NC_006146.1 + 107777 0.72 0.507843
Target:  5'- uGGCCAgcggUCCCAGGGGCaCCUgcgcagggUCU-CCUUc -3'
miRNA:   3'- -CCGGU----AGGGUCUCCG-GGA--------AGAaGGAA- -5'
29046 3' -57.4 NC_006146.1 + 102571 0.67 0.810041
Target:  5'- aGGCCGUCCUcGAcgccauccucucgcGGCCCgaggagggCUUCCg- -3'
miRNA:   3'- -CCGGUAGGGuCU--------------CCGGGaa------GAAGGaa -5'
29046 3' -57.4 NC_006146.1 + 97469 0.68 0.7288
Target:  5'- uGUCAUCCggugccaAGGGGCCCggccuUUCUUCCUc -3'
miRNA:   3'- cCGGUAGGg------UCUCCGGG-----AAGAAGGAa -5'
29046 3' -57.4 NC_006146.1 + 85778 1.07 0.002763
Target:  5'- cGGCCAUCCCAGAGGCCCUUCUUCCUUu -3'
miRNA:   3'- -CCGGUAGGGUCUCCGGGAAGAAGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.