miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 3' -57.4 NC_006146.1 + 81218 0.7 0.638207
Target:  5'- aGGCCGUUCCccGGGCCC--CUUCCg- -3'
miRNA:   3'- -CCGGUAGGGucUCCGGGaaGAAGGaa -5'
29046 3' -57.4 NC_006146.1 + 80337 0.66 0.861657
Target:  5'- gGGCCuucUCCCGGgucuucucccGGGCCCUgc-UCCa- -3'
miRNA:   3'- -CCGGu--AGGGUC----------UCCGGGAagaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 62848 0.67 0.803878
Target:  5'- uGGCCAggCCGGAGGUUCU-CUUCa-- -3'
miRNA:   3'- -CCGGUagGGUCUCCGGGAaGAAGgaa -5'
29046 3' -57.4 NC_006146.1 + 61926 0.69 0.708023
Target:  5'- gGGCCAUCaggggcuCCAG-GGCCCUgg-UCCa- -3'
miRNA:   3'- -CCGGUAG-------GGUCuCCGGGAagaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 56261 0.66 0.845277
Target:  5'- gGGCCGUCCUcggcggggagcgaGGAGGCCaggacgUCCa- -3'
miRNA:   3'- -CCGGUAGGG-------------UCUCCGGgaaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 55824 0.66 0.828049
Target:  5'- aGGCCGUCCCGGccuggguGGGCggaauguucgcccCCUUCcccUCCUc -3'
miRNA:   3'- -CCGGUAGGGUC-------UCCG-------------GGAAGa--AGGAa -5'
29046 3' -57.4 NC_006146.1 + 53315 0.66 0.837993
Target:  5'- uGGCCGgaguccgagCCCgaGGAGGCCCggCggCCg- -3'
miRNA:   3'- -CCGGUa--------GGG--UCUCCGGGaaGaaGGaa -5'
29046 3' -57.4 NC_006146.1 + 52990 0.7 0.648404
Target:  5'- cGGgCGUCUC-GAGGCCCcUCUUCUg- -3'
miRNA:   3'- -CCgGUAGGGuCUCCGGGaAGAAGGaa -5'
29046 3' -57.4 NC_006146.1 + 51768 0.7 0.617807
Target:  5'- gGGCUGUCCUuaccAGGcCCCUUUUUCCUUu -3'
miRNA:   3'- -CCGGUAGGGuc--UCC-GGGAAGAAGGAA- -5'
29046 3' -57.4 NC_006146.1 + 51036 0.69 0.709019
Target:  5'- aGGCCGgaUCCCacGGAGGCaUCUUCUcCCg- -3'
miRNA:   3'- -CCGGU--AGGG--UCUCCG-GGAAGAaGGaa -5'
29046 3' -57.4 NC_006146.1 + 49563 0.66 0.869141
Target:  5'- cGGCCAggCCCAGcauGGCCUcgaugUCcUCCa- -3'
miRNA:   3'- -CCGGUa-GGGUCu--CCGGGa----AGaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 39157 0.7 0.648404
Target:  5'- uGGCCGgguccUCCCAGcAGGUCCgugUCUcUCCa- -3'
miRNA:   3'- -CCGGU-----AGGGUC-UCCGGGa--AGA-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 28981 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 28119 0.7 0.632086
Target:  5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3'
miRNA:   3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5'
29046 3' -57.4 NC_006146.1 + 25904 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 25041 0.7 0.632086
Target:  5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3'
miRNA:   3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5'
29046 3' -57.4 NC_006146.1 + 22826 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5'
29046 3' -57.4 NC_006146.1 + 21963 0.7 0.632086
Target:  5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3'
miRNA:   3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5'
29046 3' -57.4 NC_006146.1 + 20902 0.7 0.617807
Target:  5'- aGGCCuUCgUGGAGGCCCUgagUCCg- -3'
miRNA:   3'- -CCGGuAGgGUCUCCGGGAagaAGGaa -5'
29046 3' -57.4 NC_006146.1 + 19748 0.71 0.557095
Target:  5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3'
miRNA:   3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.