Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29046 | 3' | -57.4 | NC_006146.1 | + | 85778 | 1.07 | 0.002763 |
Target: 5'- cGGCCAUCCCAGAGGCCCUUCUUCCUUu -3' miRNA: 3'- -CCGGUAGGGUCUCCGGGAAGAAGGAA- -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 52990 | 0.7 | 0.648404 |
Target: 5'- cGGgCGUCUC-GAGGCCCcUCUUCUg- -3' miRNA: 3'- -CCgGUAGGGuCUCCGGGaAGAAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 51036 | 0.69 | 0.709019 |
Target: 5'- aGGCCGgaUCCCacGGAGGCaUCUUCUcCCg- -3' miRNA: 3'- -CCGGU--AGGG--UCUCCG-GGAAGAaGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 49563 | 0.66 | 0.869141 |
Target: 5'- cGGCCAggCCCAGcauGGCCUcgaugUCcUCCa- -3' miRNA: 3'- -CCGGUa-GGGUCu--CCGGGa----AGaAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 19748 | 0.71 | 0.557095 |
Target: 5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3' miRNA: 3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 22826 | 0.71 | 0.557095 |
Target: 5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3' miRNA: 3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 28981 | 0.71 | 0.557095 |
Target: 5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3' miRNA: 3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 108464 | 0.7 | 0.617807 |
Target: 5'- aGGuCCAcuagCCCGGAGGCCgCUUCagCCa- -3' miRNA: 3'- -CC-GGUa---GGGUCUCCGG-GAAGaaGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 15808 | 0.7 | 0.632086 |
Target: 5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3' miRNA: 3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 39157 | 0.7 | 0.648404 |
Target: 5'- uGGCCGgguccUCCCAGcAGGUCCgugUCUcUCCa- -3' miRNA: 3'- -CCGGU-----AGGGUC-UCCGGGa--AGA-AGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 21963 | 0.7 | 0.632086 |
Target: 5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3' miRNA: 3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 12729 | 0.7 | 0.632086 |
Target: 5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3' miRNA: 3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 138878 | 0.72 | 0.527344 |
Target: 5'- gGGCCAgcgccucgUCCC-GAGGCCCcUCUgUCCUc -3' miRNA: 3'- -CCGGU--------AGGGuCUCCGGGaAGA-AGGAa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 25041 | 0.7 | 0.632086 |
Target: 5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3' miRNA: 3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 13592 | 0.71 | 0.557095 |
Target: 5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3' miRNA: 3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 51768 | 0.7 | 0.617807 |
Target: 5'- gGGCUGUCCUuaccAGGcCCCUUUUUCCUUu -3' miRNA: 3'- -CCGGUAGGGuc--UCC-GGGAAGAAGGAA- -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 28119 | 0.7 | 0.632086 |
Target: 5'- gGGCCAgcaagcgagaccagCCCAGAGGCCCgaggUUggagCCg- -3' miRNA: 3'- -CCGGUa-------------GGGUCUCCGGGa---AGaa--GGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 137977 | 0.7 | 0.648404 |
Target: 5'- gGGCC-UCCCGGGGGCCCggCg----- -3' miRNA: 3'- -CCGGuAGGGUCUCCGGGaaGaaggaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 16670 | 0.71 | 0.557095 |
Target: 5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3' miRNA: 3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 25904 | 0.71 | 0.557095 |
Target: 5'- gGGCC-UCCCAG-GGCCCUccagUCCa- -3' miRNA: 3'- -CCGGuAGGGUCuCCGGGAaga-AGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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