Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29046 | 3' | -57.4 | NC_006146.1 | + | 116668 | 0.74 | 0.398467 |
Target: 5'- gGGCCG-CCCAGAGGCUCUgCUcCCg- -3' miRNA: 3'- -CCGGUaGGGUCUCCGGGAaGAaGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 123589 | 0.67 | 0.794942 |
Target: 5'- aGGCCAUCauCCAgGAGGCCCgggaggagUCCc- -3' miRNA: 3'- -CCGGUAG--GGU-CUCCGGGaaga----AGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 5447 | 0.68 | 0.757827 |
Target: 5'- uGGCCuUCCUAcuGGCCauagUCUUCCUg -3' miRNA: 3'- -CCGGuAGGGUcuCCGGga--AGAAGGAa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 97469 | 0.68 | 0.7288 |
Target: 5'- uGUCAUCCggugccaAGGGGCCCggccuUUCUUCCUc -3' miRNA: 3'- cCGGUAGGg------UCUCCGGG-----AAGAAGGAa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 61926 | 0.69 | 0.708023 |
Target: 5'- gGGCCAUCaggggcuCCAG-GGCCCUgg-UCCa- -3' miRNA: 3'- -CCGGUAG-------GGUCuCCGGGAagaAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 108497 | 0.7 | 0.648404 |
Target: 5'- uGGCC-UCCgAcGAGGUCCU-CUUCCUc -3' miRNA: 3'- -CCGGuAGGgU-CUCCGGGAaGAAGGAa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 81218 | 0.7 | 0.638207 |
Target: 5'- aGGCCGUUCCccGGGCCC--CUUCCg- -3' miRNA: 3'- -CCGGUAGGGucUCCGGGaaGAAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 20902 | 0.7 | 0.617807 |
Target: 5'- aGGCCuUCgUGGAGGCCCUgagUCCg- -3' miRNA: 3'- -CCGGuAGgGUCUCCGGGAagaAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 107777 | 0.72 | 0.507843 |
Target: 5'- uGGCCAgcggUCCCAGGGGCaCCUgcgcagggUCU-CCUUc -3' miRNA: 3'- -CCGGU----AGGGUCUCCG-GGA--------AGAaGGAA- -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 62848 | 0.67 | 0.803878 |
Target: 5'- uGGCCAggCCGGAGGUUCU-CUUCa-- -3' miRNA: 3'- -CCGGUagGGUCUCCGGGAaGAAGgaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 102571 | 0.67 | 0.810041 |
Target: 5'- aGGCCGUCCUcGAcgccauccucucgcGGCCCgaggagggCUUCCg- -3' miRNA: 3'- -CCGGUAGGGuCU--------------CCGGGaa------GAAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 118509 | 0.66 | 0.829724 |
Target: 5'- gGGCCAUCaucaucgagaCGGAcGGCuCCUUCUaCCUc -3' miRNA: 3'- -CCGGUAGg---------GUCU-CCG-GGAAGAaGGAa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 3309 | 0.66 | 0.869141 |
Target: 5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3' miRNA: 3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 2377 | 0.66 | 0.869141 |
Target: 5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3' miRNA: 3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 1445 | 0.66 | 0.869141 |
Target: 5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3' miRNA: 3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 514 | 0.66 | 0.869141 |
Target: 5'- aGGCC--CCCaggGGAGGCCCggCcUCCa- -3' miRNA: 3'- -CCGGuaGGG---UCUCCGGGaaGaAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 111240 | 0.66 | 0.861657 |
Target: 5'- cGCCAaaaggCCCGGuuuGGCCUgagcgCUUCCUc -3' miRNA: 3'- cCGGUa----GGGUCu--CCGGGaa---GAAGGAa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 162282 | 0.66 | 0.861657 |
Target: 5'- gGGCgAggacaCCCAGGGGCCgUcgagUCUUUCUg -3' miRNA: 3'- -CCGgUa----GGGUCUCCGGgA----AGAAGGAa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 80337 | 0.66 | 0.861657 |
Target: 5'- gGGCCuucUCCCGGgucuucucccGGGCCCUgc-UCCa- -3' miRNA: 3'- -CCGGu--AGGGUC----------UCCGGGAagaAGGaa -5' |
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29046 | 3' | -57.4 | NC_006146.1 | + | 140689 | 0.66 | 0.846076 |
Target: 5'- cGGCCAgCCCGGcgggcgcagcGGCCCUcugCUgUCCUUg -3' miRNA: 3'- -CCGGUaGGGUCu---------CCGGGAa--GA-AGGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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