miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 5' -51.6 NC_006146.1 + 138145 0.66 0.993884
Target:  5'- uGGggGcAAuGUGGGCUUUGGGuacuGGGUu -3'
miRNA:   3'- -CCuuCuUUcCACCCGAAGCUU----CCCAc -5'
29046 5' -51.6 NC_006146.1 + 91114 0.66 0.993884
Target:  5'- cGGAGGGAGGUgaGGGUgcCGAGGGa-- -3'
miRNA:   3'- cCUUCUUUCCA--CCCGaaGCUUCCcac -5'
29046 5' -51.6 NC_006146.1 + 41077 0.66 0.993884
Target:  5'- uGGAGGGAGGccaGGGacagCGAGGGGa- -3'
miRNA:   3'- cCUUCUUUCCa--CCCgaa-GCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 116746 0.66 0.993884
Target:  5'- aGGAGGAcgagGAGGaGGGCa--GggGGGc- -3'
miRNA:   3'- -CCUUCU----UUCCaCCCGaagCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 142032 0.66 0.993884
Target:  5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3'
miRNA:   3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5'
29046 5' -51.6 NC_006146.1 + 145110 0.66 0.993884
Target:  5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3'
miRNA:   3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5'
29046 5' -51.6 NC_006146.1 + 148188 0.66 0.993884
Target:  5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3'
miRNA:   3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5'
29046 5' -51.6 NC_006146.1 + 151266 0.66 0.993884
Target:  5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3'
miRNA:   3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5'
29046 5' -51.6 NC_006146.1 + 154344 0.66 0.993884
Target:  5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3'
miRNA:   3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5'
29046 5' -51.6 NC_006146.1 + 157422 0.66 0.993884
Target:  5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3'
miRNA:   3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5'
29046 5' -51.6 NC_006146.1 + 39637 0.66 0.993238
Target:  5'- aGAAGAuggacuuGAGGUGGGCUgagacugccuuggccUUGGAGGcGg- -3'
miRNA:   3'- cCUUCU-------UUCCACCCGA---------------AGCUUCC-Cac -5'
29046 5' -51.6 NC_006146.1 + 141439 0.66 0.992946
Target:  5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3'
miRNA:   3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5'
29046 5' -51.6 NC_006146.1 + 144517 0.66 0.992946
Target:  5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3'
miRNA:   3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5'
29046 5' -51.6 NC_006146.1 + 147595 0.66 0.992946
Target:  5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3'
miRNA:   3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5'
29046 5' -51.6 NC_006146.1 + 153750 0.66 0.992946
Target:  5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3'
miRNA:   3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5'
29046 5' -51.6 NC_006146.1 + 156828 0.66 0.992946
Target:  5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3'
miRNA:   3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5'
29046 5' -51.6 NC_006146.1 + 143581 0.66 0.992946
Target:  5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3'
miRNA:   3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5'
29046 5' -51.6 NC_006146.1 + 146659 0.66 0.992946
Target:  5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3'
miRNA:   3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5'
29046 5' -51.6 NC_006146.1 + 149736 0.66 0.992946
Target:  5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3'
miRNA:   3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5'
29046 5' -51.6 NC_006146.1 + 152814 0.66 0.992946
Target:  5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3'
miRNA:   3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.