miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 5' -51.6 NC_006146.1 + 85813 1.03 0.021605
Target:  5'- aGGAAGAAAGGUGGGC-UCGAAGGGUGa -3'
miRNA:   3'- -CCUUCUUUCCACCCGaAGCUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 43622 0.79 0.522394
Target:  5'- gGGAAGAGGGaGUGGGCggCGggGcGUGg -3'
miRNA:   3'- -CCUUCUUUC-CACCCGaaGCuuCcCAC- -5'
29046 5' -51.6 NC_006146.1 + 116332 0.77 0.625311
Target:  5'- aGGAGGAGGGGgaaGGCggCGAAGGGa- -3'
miRNA:   3'- -CCUUCUUUCCac-CCGaaGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 107096 0.76 0.667046
Target:  5'- cGGggGAGuGGGUGGGuCUggGAAGGGg- -3'
miRNA:   3'- -CCuuCUU-UCCACCC-GAagCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 136169 0.76 0.687772
Target:  5'- gGGAGGAAGGGUGGcGCaccUCGAgguaggauaggGGGGUa -3'
miRNA:   3'- -CCUUCUUUCCACC-CGa--AGCU-----------UCCCAc -5'
29046 5' -51.6 NC_006146.1 + 86444 0.75 0.708306
Target:  5'- uGGGcuuGAAGGGgcagcUGGGCUUUGAGGGGg- -3'
miRNA:   3'- -CCUu--CUUUCC-----ACCCGAAGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 54368 0.75 0.718477
Target:  5'- gGGAaaAGAguGAGGUGGGCcagaCGAuGGGUGg -3'
miRNA:   3'- -CCU--UCU--UUCCACCCGaa--GCUuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 77832 0.74 0.758291
Target:  5'- cGGcGGAGGGGgGGGCg--GggGGGUGg -3'
miRNA:   3'- -CCuUCUUUCCaCCCGaagCuuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 29349 0.74 0.786966
Target:  5'- aGGAAcAGAGG-GGGCU--GAGGGGUGa -3'
miRNA:   3'- -CCUUcUUUCCaCCCGAagCUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 32339 0.74 0.796247
Target:  5'- gGGAGGAAGGGUGGcGCaccUCGAgguaggauAGGGg- -3'
miRNA:   3'- -CCUUCUUUCCACC-CGa--AGCU--------UCCCac -5'
29046 5' -51.6 NC_006146.1 + 137837 0.73 0.805374
Target:  5'- uGGAAGgcAGGgGGGC-UCGGgguGGGUGg -3'
miRNA:   3'- -CCUUCuuUCCaCCCGaAGCUu--CCCAC- -5'
29046 5' -51.6 NC_006146.1 + 3788 0.73 0.840157
Target:  5'- gGGggGggGGGgggGGGCacgCGggGGaUGg -3'
miRNA:   3'- -CCuuCuuUCCa--CCCGaa-GCuuCCcAC- -5'
29046 5' -51.6 NC_006146.1 + 93879 0.72 0.864207
Target:  5'- gGGAGGAAAGGgGGGCggaauuugCGGcAGGGg- -3'
miRNA:   3'- -CCUUCUUUCCaCCCGaa------GCU-UCCCac -5'
29046 5' -51.6 NC_006146.1 + 126008 0.72 0.871048
Target:  5'- gGGAguGGggGcGGUGGGCUUCugcugcugggccgGGAGGGa- -3'
miRNA:   3'- -CCU--UCuuU-CCACCCGAAG-------------CUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 53535 0.71 0.886299
Target:  5'- uGAAGGccgcGAGGaccgagGGGCUUCuGGGGGUGa -3'
miRNA:   3'- cCUUCU----UUCCa-----CCCGAAGcUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 132406 0.71 0.893202
Target:  5'- cGGggGAu-GGUGGGCcagacaCGguGGGUGu -3'
miRNA:   3'- -CCuuCUuuCCACCCGaa----GCuuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 153421 0.71 0.899866
Target:  5'- cGggGgcGGGUGuggcuGGCUUUGGAGGGg- -3'
miRNA:   3'- cCuuCuuUCCAC-----CCGAAGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 33821 0.71 0.899866
Target:  5'- uGGAAGGcaacgGGGGUGGGggaggGAGGGGUGu -3'
miRNA:   3'- -CCUUCU-----UUCCACCCgaag-CUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 33634 0.71 0.899866
Target:  5'- uGGAAGGcaacgGGGGUGGGggaggGAGGGGUGu -3'
miRNA:   3'- -CCUUCU-----UUCCACCCgaag-CUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 33220 0.71 0.906289
Target:  5'- aGGggGAGccgggaugGGGcUGGGgUUCcGGGGGUGg -3'
miRNA:   3'- -CCuuCUU--------UCC-ACCCgAAGcUUCCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.