miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 5' -51.6 NC_006146.1 + 33220 0.71 0.906289
Target:  5'- aGGggGAGccgggaugGGGcUGGGgUUCcGGGGGUGg -3'
miRNA:   3'- -CCuuCUU--------UCC-ACCCgAAGcUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 10 0.71 0.912467
Target:  5'- aGGggGGAGGGgGGGU--UGAGGGGc- -3'
miRNA:   3'- -CCuuCUUUCCaCCCGaaGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 167504 0.71 0.912467
Target:  5'- gGGGAGAGGGGgcaGGGCUggCGccGGGc- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGAa-GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 81 0.71 0.912467
Target:  5'- aGGguGAuuucGGGgagGGGCUUCGucacgcAAGGGUGa -3'
miRNA:   3'- -CCuuCUu---UCCa--CCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 170299 0.71 0.912467
Target:  5'- gGGGAGAGGGGgcaGGGCUggCGccGGGc- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGAa-GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 169368 0.71 0.912467
Target:  5'- gGGGAGAGGGGgcaGGGCUggCGccGGGc- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGAa-GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 168436 0.71 0.912467
Target:  5'- gGGGAGAGGGGgcaGGGCUggCGccGGGc- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGAa-GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 117618 0.7 0.918398
Target:  5'- aGGAGGAGAGGUGGGaagacgaCGAGcucuGGGa- -3'
miRNA:   3'- -CCUUCUUUCCACCCgaa----GCUU----CCCac -5'
29046 5' -51.6 NC_006146.1 + 13922 0.7 0.924081
Target:  5'- uGGAAGGAguggcGGGUGGGCc-CGggGGa-- -3'
miRNA:   3'- -CCUUCUU-----UCCACCCGaaGCuuCCcac -5'
29046 5' -51.6 NC_006146.1 + 156015 0.7 0.934699
Target:  5'- aGAAGuuAGGccugGGGCcUCGGAGGGc- -3'
miRNA:   3'- cCUUCuuUCCa---CCCGaAGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 151065 0.7 0.934699
Target:  5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3'
miRNA:   3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 154143 0.7 0.934699
Target:  5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3'
miRNA:   3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 152937 0.7 0.934699
Target:  5'- aGAAGuuAGGccugGGGCcUCGGAGGGc- -3'
miRNA:   3'- cCUUCuuUCCa---CCCGaAGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 2909 0.7 0.934699
Target:  5'- aGGguGAuuuAGGagagGGGCUUCGucacgcAAGGGUGa -3'
miRNA:   3'- -CCuuCUu--UCCa---CCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 1044 0.7 0.934699
Target:  5'- aGGguGAuuuAGGagagGGGCUUCGucacgcAAGGGUGa -3'
miRNA:   3'- -CCuuCUu--UCCa---CCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 157221 0.7 0.934699
Target:  5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3'
miRNA:   3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 147987 0.7 0.934699
Target:  5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3'
miRNA:   3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 146781 0.7 0.934699
Target:  5'- aGAAGuuAGGccugGGGCcUCGGAGGGc- -3'
miRNA:   3'- cCUUCuuUCCa---CCCGaAGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 144909 0.7 0.934699
Target:  5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3'
miRNA:   3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 141831 0.7 0.934699
Target:  5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3'
miRNA:   3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.