miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 5' -51.6 NC_006146.1 + 152814 0.66 0.992946
Target:  5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3'
miRNA:   3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5'
29046 5' -51.6 NC_006146.1 + 155892 0.66 0.992946
Target:  5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3'
miRNA:   3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5'
29046 5' -51.6 NC_006146.1 + 45038 0.66 0.991896
Target:  5'- aGGGAGAGAGGccgGGGCcggcUCccuAGGGg- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGa---AGcu-UCCCac -5'
29046 5' -51.6 NC_006146.1 + 48589 0.66 0.991896
Target:  5'- cGGggGucAGG-GaGGCca-GAAGGGUGu -3'
miRNA:   3'- -CCuuCuuUCCaC-CCGaagCUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 166869 0.66 0.990726
Target:  5'- cGGcGGGAGGG-GGGag-CGGAGGGc- -3'
miRNA:   3'- -CCuUCUUUCCaCCCgaaGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 41753 0.66 0.990726
Target:  5'- -uGAGAcGGGUGGGCUUcccgcCGGAGGc-- -3'
miRNA:   3'- ccUUCUuUCCACCCGAA-----GCUUCCcac -5'
29046 5' -51.6 NC_006146.1 + 150673 0.66 0.990726
Target:  5'- cGggGAGGGGUGGGgagUGGccAGGGg- -3'
miRNA:   3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5'
29046 5' -51.6 NC_006146.1 + 2855 0.66 0.989428
Target:  5'- --cGGAGAG--GGGCUUCGucacgcAAGGGUGa -3'
miRNA:   3'- ccuUCUUUCcaCCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 51886 0.66 0.989428
Target:  5'- aGAGGGGAGGgugGaGGCUgcgUCGgcGGGg- -3'
miRNA:   3'- cCUUCUUUCCa--C-CCGA---AGCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 147091 0.66 0.989428
Target:  5'- aGGGAGAGAGaaGUGGGCgagcuGGGGc- -3'
miRNA:   3'- -CCUUCUUUC--CACCCGaagcuUCCCac -5'
29046 5' -51.6 NC_006146.1 + 123 0.66 0.989428
Target:  5'- --cGGAGAG--GGGCUUCGucacgcAAGGGUGa -3'
miRNA:   3'- ccuUCUUUCcaCCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 1945 0.66 0.98929
Target:  5'- aGGGugauuucGGAGAG--GGGCUUCGucacgcAAGGGUGa -3'
miRNA:   3'- -CCU-------UCUUUCcaCCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 17 0.66 0.98929
Target:  5'- aGGGugauuucGGAGAG--GGGCUUCGuuacgcAAGGGUGa -3'
miRNA:   3'- -CCU-------UCUUUCcaCCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 136010 0.67 0.987991
Target:  5'- gGGAGGggGGGUaGGGggg-GGAGGGa- -3'
miRNA:   3'- -CCUUCuuUCCA-CCCgaagCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 162404 0.67 0.987991
Target:  5'- uGGGAGuaacaaguGGUGGGCa-CGGgcuaGGGGUGu -3'
miRNA:   3'- -CCUUCuuu-----CCACCCGaaGCU----UCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 161718 0.67 0.98784
Target:  5'- uGGGAGAAggcuuggGGGUGGGUggcaCGguGGGa- -3'
miRNA:   3'- -CCUUCUU-------UCCACCCGaa--GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 147641 0.67 0.986409
Target:  5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3'
miRNA:   3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5'
29046 5' -51.6 NC_006146.1 + 150718 0.67 0.986409
Target:  5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3'
miRNA:   3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5'
29046 5' -51.6 NC_006146.1 + 156874 0.67 0.986409
Target:  5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3'
miRNA:   3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5'
29046 5' -51.6 NC_006146.1 + 42272 0.67 0.986409
Target:  5'- cGGGAGGAGGaUGGGUggUGgcGGGg- -3'
miRNA:   3'- -CCUUCUUUCcACCCGaaGCuuCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.