miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 5' -51.6 NC_006146.1 + 156874 0.67 0.986409
Target:  5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3'
miRNA:   3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5'
29046 5' -51.6 NC_006146.1 + 150718 0.67 0.986409
Target:  5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3'
miRNA:   3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5'
29046 5' -51.6 NC_006146.1 + 141485 0.67 0.986409
Target:  5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3'
miRNA:   3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5'
29046 5' -51.6 NC_006146.1 + 51831 0.67 0.98467
Target:  5'- gGGAAGcgccGGAGGUGGGCUgCGGuugcAGGccaGUGc -3'
miRNA:   3'- -CCUUC----UUUCCACCCGAaGCU----UCC---CAC- -5'
29046 5' -51.6 NC_006146.1 + 140064 0.67 0.984488
Target:  5'- uGGAGGAGguugaacAGG-GGGUggUGGAGGGg- -3'
miRNA:   3'- -CCUUCUU-------UCCaCCCGaaGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 90033 0.67 0.984488
Target:  5'- aGGggGAagcgguggagcagGAGGUGGuGCU--GGAGGGa- -3'
miRNA:   3'- -CCuuCU-------------UUCCACC-CGAagCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 166697 0.67 0.982768
Target:  5'- gGGGAGAcGGGgcaaUGGGa---GggGGGUGu -3'
miRNA:   3'- -CCUUCUuUCC----ACCCgaagCuuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 113966 0.68 0.978437
Target:  5'- uGGAAGAGGGGggugcccggGGGCUccgcguugUUGAAGGa-- -3'
miRNA:   3'- -CCUUCUUUCCa--------CCCGA--------AGCUUCCcac -5'
29046 5' -51.6 NC_006146.1 + 40300 0.68 0.978437
Target:  5'- aGGAAGAGAauagcGGUcgGGGCcUCGGuGGGGUu -3'
miRNA:   3'- -CCUUCUUU-----CCA--CCCGaAGCU-UCCCAc -5'
29046 5' -51.6 NC_006146.1 + 71913 0.68 0.975991
Target:  5'- nGGuGGAcacuGAGGUgGGGCUgguggCGuuAGGGGUGg -3'
miRNA:   3'- -CCuUCU----UUCCA-CCCGAa----GC--UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 71877 0.68 0.975991
Target:  5'- uGGuGGAcacuGAGGUgGGGCUgguggCGuuAGGGGUGg -3'
miRNA:   3'- -CCuUCU----UUCCA-CCCGAa----GC--UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 6191 0.68 0.975991
Target:  5'- cGGAGGAGAuGG-GGGCgauggUGAAGacGGUGa -3'
miRNA:   3'- -CCUUCUUU-CCaCCCGaa---GCUUC--CCAC- -5'
29046 5' -51.6 NC_006146.1 + 158379 0.68 0.970502
Target:  5'- -cGGGgcAGGcGGGCUgcgCGAAGGGg- -3'
miRNA:   3'- ccUUCuuUCCaCCCGAa--GCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 69200 0.68 0.970502
Target:  5'- cGGAGGGGAcGUGGGCUUgGgcGGa-- -3'
miRNA:   3'- -CCUUCUUUcCACCCGAAgCuuCCcac -5'
29046 5' -51.6 NC_006146.1 + 69535 0.68 0.970502
Target:  5'- aGGAAuGggGGGUggGGGCaUUGAcAGGGUc -3'
miRNA:   3'- -CCUU-CuuUCCA--CCCGaAGCU-UCCCAc -5'
29046 5' -51.6 NC_006146.1 + 42841 0.68 0.967443
Target:  5'- -uGAGGccGGUGGuCUUgCGggGGGUGa -3'
miRNA:   3'- ccUUCUuuCCACCcGAA-GCuuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 71230 0.68 0.964167
Target:  5'- --uAGAAuuGGUGGGaggUgGAGGGGUGg -3'
miRNA:   3'- ccuUCUUu-CCACCCga-AgCUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 140097 0.68 0.964167
Target:  5'- uGGAAGAGGGG-GuGGCg--GAGGuGGUGg -3'
miRNA:   3'- -CCUUCUUUCCaC-CCGaagCUUC-CCAC- -5'
29046 5' -51.6 NC_006146.1 + 140121 0.68 0.964167
Target:  5'- nGGAAGAGGGG-GuGGCg--GAGGuGGUGg -3'
miRNA:   3'- -CCUUCUUUCCaC-CCGaagCUUC-CCAC- -5'
29046 5' -51.6 NC_006146.1 + 90303 0.69 0.960666
Target:  5'- aGGAAGGggcaGAGGggagGGGCcuaGuAAGGGUGa -3'
miRNA:   3'- -CCUUCU----UUCCa---CCCGaagC-UUCCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.