miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 5' -51.6 NC_006146.1 + 10 0.71 0.912467
Target:  5'- aGGggGGAGGGgGGGU--UGAGGGGc- -3'
miRNA:   3'- -CCuuCUUUCCaCCCGaaGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 17 0.66 0.98929
Target:  5'- aGGGugauuucGGAGAG--GGGCUUCGuuacgcAAGGGUGa -3'
miRNA:   3'- -CCU-------UCUUUCcaCCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 81 0.71 0.912467
Target:  5'- aGGguGAuuucGGGgagGGGCUUCGucacgcAAGGGUGa -3'
miRNA:   3'- -CCuuCUu---UCCa--CCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 123 0.66 0.989428
Target:  5'- --cGGAGAG--GGGCUUCGucacgcAAGGGUGa -3'
miRNA:   3'- ccuUCUUUCcaCCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 1044 0.7 0.934699
Target:  5'- aGGguGAuuuAGGagagGGGCUUCGucacgcAAGGGUGa -3'
miRNA:   3'- -CCuuCUu--UCCa---CCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 1945 0.66 0.98929
Target:  5'- aGGGugauuucGGAGAG--GGGCUUCGucacgcAAGGGUGa -3'
miRNA:   3'- -CCU-------UCUUUCcaCCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 2855 0.66 0.989428
Target:  5'- --cGGAGAG--GGGCUUCGucacgcAAGGGUGa -3'
miRNA:   3'- ccuUCUUUCcaCCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 2909 0.7 0.934699
Target:  5'- aGGguGAuuuAGGagagGGGCUUCGucacgcAAGGGUGa -3'
miRNA:   3'- -CCuuCUu--UCCa---CCCGAAGC------UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 3788 0.73 0.840157
Target:  5'- gGGggGggGGGgggGGGCacgCGggGGaUGg -3'
miRNA:   3'- -CCuuCuuUCCa--CCCGaa-GCuuCCcAC- -5'
29046 5' -51.6 NC_006146.1 + 4500 0.69 0.960666
Target:  5'- uGGAGAuggcacuGGcGGGCcagCGggGGGUGa -3'
miRNA:   3'- cCUUCUuu-----CCaCCCGaa-GCuuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 6191 0.68 0.975991
Target:  5'- cGGAGGAGAuGG-GGGCgauggUGAAGacGGUGa -3'
miRNA:   3'- -CCUUCUUU-CCaCCCGaa---GCUUC--CCAC- -5'
29046 5' -51.6 NC_006146.1 + 13922 0.7 0.924081
Target:  5'- uGGAAGGAguggcGGGUGGGCc-CGggGGa-- -3'
miRNA:   3'- -CCUUCUU-----UCCACCCGaaGCuuCCcac -5'
29046 5' -51.6 NC_006146.1 + 29349 0.74 0.786966
Target:  5'- aGGAAcAGAGG-GGGCU--GAGGGGUGa -3'
miRNA:   3'- -CCUUcUUUCCaCCCGAagCUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 32339 0.74 0.796247
Target:  5'- gGGAGGAAGGGUGGcGCaccUCGAgguaggauAGGGg- -3'
miRNA:   3'- -CCUUCUUUCCACC-CGa--AGCU--------UCCCac -5'
29046 5' -51.6 NC_006146.1 + 33220 0.71 0.906289
Target:  5'- aGGggGAGccgggaugGGGcUGGGgUUCcGGGGGUGg -3'
miRNA:   3'- -CCuuCUU--------UCC-ACCCgAAGcUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 33634 0.71 0.899866
Target:  5'- uGGAAGGcaacgGGGGUGGGggaggGAGGGGUGu -3'
miRNA:   3'- -CCUUCU-----UUCCACCCgaag-CUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 33821 0.71 0.899866
Target:  5'- uGGAAGGcaacgGGGGUGGGggaggGAGGGGUGu -3'
miRNA:   3'- -CCUUCU-----UUCCACCCgaag-CUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 39637 0.66 0.993238
Target:  5'- aGAAGAuggacuuGAGGUGGGCUgagacugccuuggccUUGGAGGcGg- -3'
miRNA:   3'- cCUUCU-------UUCCACCCGA---------------AGCUUCC-Cac -5'
29046 5' -51.6 NC_006146.1 + 40300 0.68 0.978437
Target:  5'- aGGAAGAGAauagcGGUcgGGGCcUCGGuGGGGUu -3'
miRNA:   3'- -CCUUCUUU-----CCA--CCCGaAGCU-UCCCAc -5'
29046 5' -51.6 NC_006146.1 + 41077 0.66 0.993884
Target:  5'- uGGAGGGAGGccaGGGacagCGAGGGGa- -3'
miRNA:   3'- cCUUCUUUCCa--CCCgaa-GCUUCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.