miRNA display CGI


Results 21 - 40 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 5' -51.6 NC_006146.1 + 41753 0.66 0.990726
Target:  5'- -uGAGAcGGGUGGGCUUcccgcCGGAGGc-- -3'
miRNA:   3'- ccUUCUuUCCACCCGAA-----GCUUCCcac -5'
29046 5' -51.6 NC_006146.1 + 42272 0.67 0.986409
Target:  5'- cGGGAGGAGGaUGGGUggUGgcGGGg- -3'
miRNA:   3'- -CCUUCUUUCcACCCGaaGCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 42841 0.68 0.967443
Target:  5'- -uGAGGccGGUGGuCUUgCGggGGGUGa -3'
miRNA:   3'- ccUUCUuuCCACCcGAA-GCuuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 43622 0.79 0.522394
Target:  5'- gGGAAGAGGGaGUGGGCggCGggGcGUGg -3'
miRNA:   3'- -CCUUCUUUC-CACCCGaaGCuuCcCAC- -5'
29046 5' -51.6 NC_006146.1 + 43758 0.69 0.944325
Target:  5'- cGGAcAGAGAGGagUGGGCcgcaGAGGGGa- -3'
miRNA:   3'- -CCU-UCUUUCC--ACCCGaag-CUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 44768 0.69 0.960666
Target:  5'- cGGggGAGAGGgugccgugccGGGCUcaGggGGGc- -3'
miRNA:   3'- -CCuuCUUUCCa---------CCCGAagCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 45038 0.66 0.991896
Target:  5'- aGGGAGAGAGGccgGGGCcggcUCccuAGGGg- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGa---AGcu-UCCCac -5'
29046 5' -51.6 NC_006146.1 + 48589 0.66 0.991896
Target:  5'- cGGggGucAGG-GaGGCca-GAAGGGUGu -3'
miRNA:   3'- -CCuuCuuUCCaC-CCGaagCUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 51734 0.69 0.960666
Target:  5'- gGGGAGGcggcgccccGAGGUGGGCUUCuugugcGGGcUGu -3'
miRNA:   3'- -CCUUCU---------UUCCACCCGAAGcuu---CCC-AC- -5'
29046 5' -51.6 NC_006146.1 + 51831 0.67 0.98467
Target:  5'- gGGAAGcgccGGAGGUGGGCUgCGGuugcAGGccaGUGc -3'
miRNA:   3'- -CCUUC----UUUCCACCCGAaGCU----UCC---CAC- -5'
29046 5' -51.6 NC_006146.1 + 51886 0.66 0.989428
Target:  5'- aGAGGGGAGGgugGaGGCUgcgUCGgcGGGg- -3'
miRNA:   3'- cCUUCUUUCCa--C-CCGA---AGCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 53535 0.71 0.886299
Target:  5'- uGAAGGccgcGAGGaccgagGGGCUUCuGGGGGUGa -3'
miRNA:   3'- cCUUCU----UUCCa-----CCCGAAGcUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 54368 0.75 0.718477
Target:  5'- gGGAaaAGAguGAGGUGGGCcagaCGAuGGGUGg -3'
miRNA:   3'- -CCU--UCU--UUCCACCCGaa--GCUuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 63652 0.69 0.958456
Target:  5'- cGGggGugaugaacuAGGUGGGCUUUccugcacacaguuGGGGUGg -3'
miRNA:   3'- -CCuuCuu-------UCCACCCGAAGcu-----------UCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 68619 0.69 0.950479
Target:  5'- uGAGGAAGGGaGGGCUggcggggagaccaaCGAGGGGc- -3'
miRNA:   3'- cCUUCUUUCCaCCCGAa-------------GCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 69200 0.68 0.970502
Target:  5'- cGGAGGGGAcGUGGGCUUgGgcGGa-- -3'
miRNA:   3'- -CCUUCUUUcCACCCGAAgCuuCCcac -5'
29046 5' -51.6 NC_006146.1 + 69535 0.68 0.970502
Target:  5'- aGGAAuGggGGGUggGGGCaUUGAcAGGGUc -3'
miRNA:   3'- -CCUU-CuuUCCA--CCCGaAGCU-UCCCAc -5'
29046 5' -51.6 NC_006146.1 + 71230 0.68 0.964167
Target:  5'- --uAGAAuuGGUGGGaggUgGAGGGGUGg -3'
miRNA:   3'- ccuUCUUu-CCACCCga-AgCUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 71877 0.68 0.975991
Target:  5'- uGGuGGAcacuGAGGUgGGGCUgguggCGuuAGGGGUGg -3'
miRNA:   3'- -CCuUCU----UUCCA-CCCGAa----GC--UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 71913 0.68 0.975991
Target:  5'- nGGuGGAcacuGAGGUgGGGCUgguggCGuuAGGGGUGg -3'
miRNA:   3'- -CCuUCU----UUCCA-CCCGAa----GC--UUCCCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.