miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 5' -51.6 NC_006146.1 + 170299 0.71 0.912467
Target:  5'- gGGGAGAGGGGgcaGGGCUggCGccGGGc- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGAa-GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 169368 0.71 0.912467
Target:  5'- gGGGAGAGGGGgcaGGGCUggCGccGGGc- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGAa-GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 168436 0.71 0.912467
Target:  5'- gGGGAGAGGGGgcaGGGCUggCGccGGGc- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGAa-GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 167504 0.71 0.912467
Target:  5'- gGGGAGAGGGGgcaGGGCUggCGccGGGc- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGAa-GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 166869 0.66 0.990726
Target:  5'- cGGcGGGAGGG-GGGag-CGGAGGGc- -3'
miRNA:   3'- -CCuUCUUUCCaCCCgaaGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 166697 0.67 0.982768
Target:  5'- gGGGAGAcGGGgcaaUGGGa---GggGGGUGu -3'
miRNA:   3'- -CCUUCUuUCC----ACCCgaagCuuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 162404 0.67 0.987991
Target:  5'- uGGGAGuaacaaguGGUGGGCa-CGGgcuaGGGGUGu -3'
miRNA:   3'- -CCUUCuuu-----CCACCCGaaGCU----UCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 161718 0.67 0.98784
Target:  5'- uGGGAGAAggcuuggGGGUGGGUggcaCGguGGGa- -3'
miRNA:   3'- -CCUUCUU-------UCCACCCGaa--GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 159809 0.7 0.939636
Target:  5'- uGGAAGuaaacguGGUGGGUaUCGc-GGGUGg -3'
miRNA:   3'- -CCUUCuuu----CCACCCGaAGCuuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 158379 0.68 0.970502
Target:  5'- -cGGGgcAGGcGGGCUgcgCGAAGGGg- -3'
miRNA:   3'- ccUUCuuUCCaCCCGAa--GCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 157422 0.66 0.993884
Target:  5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3'
miRNA:   3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5'
29046 5' -51.6 NC_006146.1 + 157221 0.7 0.934699
Target:  5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3'
miRNA:   3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 156874 0.67 0.986409
Target:  5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3'
miRNA:   3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5'
29046 5' -51.6 NC_006146.1 + 156828 0.66 0.992946
Target:  5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3'
miRNA:   3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5'
29046 5' -51.6 NC_006146.1 + 156015 0.7 0.934699
Target:  5'- aGAAGuuAGGccugGGGCcUCGGAGGGc- -3'
miRNA:   3'- cCUUCuuUCCa---CCCGaAGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 155892 0.66 0.992946
Target:  5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3'
miRNA:   3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5'
29046 5' -51.6 NC_006146.1 + 154344 0.66 0.993884
Target:  5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3'
miRNA:   3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5'
29046 5' -51.6 NC_006146.1 + 154143 0.7 0.934699
Target:  5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3'
miRNA:   3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 153796 0.67 0.986409
Target:  5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3'
miRNA:   3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5'
29046 5' -51.6 NC_006146.1 + 153750 0.66 0.992946
Target:  5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3'
miRNA:   3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.