Results 21 - 40 of 110 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 153421 | 0.71 | 0.899866 |
Target: 5'- cGggGgcGGGUGuggcuGGCUUUGGAGGGg- -3' miRNA: 3'- cCuuCuuUCCAC-----CCGAAGCUUCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 152937 | 0.7 | 0.934699 |
Target: 5'- aGAAGuuAGGccugGGGCcUCGGAGGGc- -3' miRNA: 3'- cCUUCuuUCCa---CCCGaAGCUUCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 152814 | 0.66 | 0.992946 |
Target: 5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3' miRNA: 3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 151266 | 0.66 | 0.993884 |
Target: 5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3' miRNA: 3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 151065 | 0.7 | 0.934699 |
Target: 5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3' miRNA: 3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 150718 | 0.67 | 0.986409 |
Target: 5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3' miRNA: 3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 150673 | 0.66 | 0.990726 |
Target: 5'- cGggGAGGGGUGGGgagUGGccAGGGg- -3' miRNA: 3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 149859 | 0.7 | 0.934699 |
Target: 5'- aGAAGuuAGGccugGGGCcUCGGAGGGc- -3' miRNA: 3'- cCUUCuuUCCa---CCCGaAGCUUCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 149736 | 0.66 | 0.992946 |
Target: 5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3' miRNA: 3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 148188 | 0.66 | 0.993884 |
Target: 5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3' miRNA: 3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 147987 | 0.7 | 0.934699 |
Target: 5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3' miRNA: 3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 147641 | 0.67 | 0.986409 |
Target: 5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3' miRNA: 3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 147595 | 0.66 | 0.992946 |
Target: 5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3' miRNA: 3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 147091 | 0.66 | 0.989428 |
Target: 5'- aGGGAGAGAGaaGUGGGCgagcuGGGGc- -3' miRNA: 3'- -CCUUCUUUC--CACCCGaagcuUCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 146781 | 0.7 | 0.934699 |
Target: 5'- aGAAGuuAGGccugGGGCcUCGGAGGGc- -3' miRNA: 3'- cCUUCuuUCCa---CCCGaAGCUUCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 146659 | 0.66 | 0.992946 |
Target: 5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3' miRNA: 3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 145110 | 0.66 | 0.993884 |
Target: 5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3' miRNA: 3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 144909 | 0.7 | 0.934699 |
Target: 5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3' miRNA: 3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 144563 | 0.67 | 0.986409 |
Target: 5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3' miRNA: 3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5' |
|||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 144517 | 0.66 | 0.992946 |
Target: 5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3' miRNA: 3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home