miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 5' -51.6 NC_006146.1 + 85813 1.03 0.021605
Target:  5'- aGGAAGAAAGGUGGGC-UCGAAGGGUGa -3'
miRNA:   3'- -CCUUCUUUCCACCCGaAGCUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 51734 0.69 0.960666
Target:  5'- gGGGAGGcggcgccccGAGGUGGGCUUCuugugcGGGcUGu -3'
miRNA:   3'- -CCUUCU---------UUCCACCCGAAGcuu---CCC-AC- -5'
29046 5' -51.6 NC_006146.1 + 4500 0.69 0.960666
Target:  5'- uGGAGAuggcacuGGcGGGCcagCGggGGGUGa -3'
miRNA:   3'- cCUUCUuu-----CCaCCCGaa-GCuuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 91114 0.66 0.993884
Target:  5'- cGGAGGGAGGUgaGGGUgcCGAGGGa-- -3'
miRNA:   3'- cCUUCUUUCCA--CCCGaaGCUUCCcac -5'
29046 5' -51.6 NC_006146.1 + 126008 0.72 0.871048
Target:  5'- gGGAguGGggGcGGUGGGCUUCugcugcugggccgGGAGGGa- -3'
miRNA:   3'- -CCU--UCuuU-CCACCCGAAG-------------CUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 53535 0.71 0.886299
Target:  5'- uGAAGGccgcGAGGaccgagGGGCUUCuGGGGGUGa -3'
miRNA:   3'- cCUUCU----UUCCa-----CCCGAAGcUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 33634 0.71 0.899866
Target:  5'- uGGAAGGcaacgGGGGUGGGggaggGAGGGGUGu -3'
miRNA:   3'- -CCUUCU-----UUCCACCCgaag-CUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 33821 0.71 0.899866
Target:  5'- uGGAAGGcaacgGGGGUGGGggaggGAGGGGUGu -3'
miRNA:   3'- -CCUUCU-----UUCCACCCgaag-CUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 167504 0.71 0.912467
Target:  5'- gGGGAGAGGGGgcaGGGCUggCGccGGGc- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGAa-GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 63652 0.69 0.958456
Target:  5'- cGGggGugaugaacuAGGUGGGCUUUccugcacacaguuGGGGUGg -3'
miRNA:   3'- -CCuuCuu-------UCCACCCGAAGcu-----------UCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 169368 0.71 0.912467
Target:  5'- gGGGAGAGGGGgcaGGGCUggCGccGGGc- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGAa-GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 10 0.71 0.912467
Target:  5'- aGGggGGAGGGgGGGU--UGAGGGGc- -3'
miRNA:   3'- -CCuuCUUUCCaCCCGaaGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 54368 0.75 0.718477
Target:  5'- gGGAaaAGAguGAGGUGGGCcagaCGAuGGGUGg -3'
miRNA:   3'- -CCU--UCU--UUCCACCCGaa--GCUuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 170299 0.71 0.912467
Target:  5'- gGGGAGAGGGGgcaGGGCUggCGccGGGc- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGAa-GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 137837 0.73 0.805374
Target:  5'- uGGAAGgcAGGgGGGC-UCGGgguGGGUGg -3'
miRNA:   3'- -CCUUCuuUCCaCCCGaAGCUu--CCCAC- -5'
29046 5' -51.6 NC_006146.1 + 153421 0.71 0.899866
Target:  5'- cGggGgcGGGUGuggcuGGCUUUGGAGGGg- -3'
miRNA:   3'- cCuuCuuUCCAC-----CCGAAGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 43758 0.69 0.944325
Target:  5'- cGGAcAGAGAGGagUGGGCcgcaGAGGGGa- -3'
miRNA:   3'- -CCU-UCUUUCC--ACCCGaag-CUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 90303 0.69 0.960666
Target:  5'- aGGAAGGggcaGAGGggagGGGCcuaGuAAGGGUGa -3'
miRNA:   3'- -CCUUCU----UUCCa---CCCGaagC-UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 93879 0.72 0.864207
Target:  5'- gGGAGGAAAGGgGGGCggaauuugCGGcAGGGg- -3'
miRNA:   3'- -CCUUCUUUCCaCCCGaa------GCU-UCCCac -5'
29046 5' -51.6 NC_006146.1 + 132406 0.71 0.893202
Target:  5'- cGGggGAu-GGUGGGCcagacaCGguGGGUGu -3'
miRNA:   3'- -CCuuCUuuCCACCCGaa----GCuuCCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.