miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29046 5' -51.6 NC_006146.1 + 10 0.71 0.912467
Target:  5'- aGGggGGAGGGgGGGU--UGAGGGGc- -3'
miRNA:   3'- -CCuuCUUUCCaCCCGaaGCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 93879 0.72 0.864207
Target:  5'- gGGAGGAAAGGgGGGCggaauuugCGGcAGGGg- -3'
miRNA:   3'- -CCUUCUUUCCaCCCGaa------GCU-UCCCac -5'
29046 5' -51.6 NC_006146.1 + 45038 0.66 0.991896
Target:  5'- aGGGAGAGAGGccgGGGCcggcUCccuAGGGg- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGa---AGcu-UCCCac -5'
29046 5' -51.6 NC_006146.1 + 166697 0.67 0.982768
Target:  5'- gGGGAGAcGGGgcaaUGGGa---GggGGGUGu -3'
miRNA:   3'- -CCUUCUuUCC----ACCCgaagCuuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 51734 0.69 0.960666
Target:  5'- gGGGAGGcggcgccccGAGGUGGGCUUCuugugcGGGcUGu -3'
miRNA:   3'- -CCUUCU---------UUCCACCCGAAGcuu---CCC-AC- -5'
29046 5' -51.6 NC_006146.1 + 137837 0.73 0.805374
Target:  5'- uGGAAGgcAGGgGGGC-UCGGgguGGGUGg -3'
miRNA:   3'- -CCUUCuuUCCaCCCGaAGCUu--CCCAC- -5'
29046 5' -51.6 NC_006146.1 + 40300 0.68 0.978437
Target:  5'- aGGAAGAGAauagcGGUcgGGGCcUCGGuGGGGUu -3'
miRNA:   3'- -CCUUCUUU-----CCA--CCCGaAGCU-UCCCAc -5'
29046 5' -51.6 NC_006146.1 + 54368 0.75 0.718477
Target:  5'- gGGAaaAGAguGAGGUGGGCcagaCGAuGGGUGg -3'
miRNA:   3'- -CCU--UCU--UUCCACCCGaa--GCUuCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 85813 1.03 0.021605
Target:  5'- aGGAAGAAAGGUGGGC-UCGAAGGGUGa -3'
miRNA:   3'- -CCUUCUUUCCACCCGaAGCUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 90303 0.69 0.960666
Target:  5'- aGGAAGGggcaGAGGggagGGGCcuaGuAAGGGUGa -3'
miRNA:   3'- -CCUUCU----UUCCa---CCCGaagC-UUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 48589 0.66 0.991896
Target:  5'- cGGggGucAGG-GaGGCca-GAAGGGUGu -3'
miRNA:   3'- -CCuuCuuUCCaC-CCGaagCUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 167504 0.71 0.912467
Target:  5'- gGGGAGAGGGGgcaGGGCUggCGccGGGc- -3'
miRNA:   3'- -CCUUCUUUCCa--CCCGAa-GCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 158379 0.68 0.970502
Target:  5'- -cGGGgcAGGcGGGCUgcgCGAAGGGg- -3'
miRNA:   3'- ccUUCuuUCCaCCCGAa--GCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 90033 0.67 0.984488
Target:  5'- aGGggGAagcgguggagcagGAGGUGGuGCU--GGAGGGa- -3'
miRNA:   3'- -CCuuCU-------------UUCCACC-CGAagCUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 51886 0.66 0.989428
Target:  5'- aGAGGGGAGGgugGaGGCUgcgUCGgcGGGg- -3'
miRNA:   3'- cCUUCUUUCCa--C-CCGA---AGCuuCCCac -5'
29046 5' -51.6 NC_006146.1 + 33634 0.71 0.899866
Target:  5'- uGGAAGGcaacgGGGGUGGGggaggGAGGGGUGu -3'
miRNA:   3'- -CCUUCU-----UUCCACCCgaag-CUUCCCAC- -5'
29046 5' -51.6 NC_006146.1 + 126008 0.72 0.871048
Target:  5'- gGGAguGGggGcGGUGGGCUUCugcugcugggccgGGAGGGa- -3'
miRNA:   3'- -CCU--UCuuU-CCACCCGAAG-------------CUUCCCac -5'
29046 5' -51.6 NC_006146.1 + 143581 0.66 0.992946
Target:  5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3'
miRNA:   3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5'
29046 5' -51.6 NC_006146.1 + 156874 0.67 0.986409
Target:  5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3'
miRNA:   3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5'
29046 5' -51.6 NC_006146.1 + 136010 0.67 0.987991
Target:  5'- gGGAGGggGGGUaGGGggg-GGAGGGa- -3'
miRNA:   3'- -CCUUCuuUCCA-CCCgaagCUUCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.