Results 41 - 60 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 2909 | 0.7 | 0.934699 |
Target: 5'- aGGguGAuuuAGGagagGGGCUUCGucacgcAAGGGUGa -3' miRNA: 3'- -CCuuCUu--UCCa---CCCGAAGC------UUCCCAC- -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 154143 | 0.7 | 0.934699 |
Target: 5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3' miRNA: 3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 141831 | 0.7 | 0.934699 |
Target: 5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3' miRNA: 3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 144909 | 0.7 | 0.934699 |
Target: 5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3' miRNA: 3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 146781 | 0.7 | 0.934699 |
Target: 5'- aGAAGuuAGGccugGGGCcUCGGAGGGc- -3' miRNA: 3'- cCUUCuuUCCa---CCCGaAGCUUCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 152937 | 0.7 | 0.934699 |
Target: 5'- aGAAGuuAGGccugGGGCcUCGGAGGGc- -3' miRNA: 3'- cCUUCuuUCCa---CCCGaAGCUUCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 147987 | 0.7 | 0.934699 |
Target: 5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3' miRNA: 3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 151065 | 0.7 | 0.934699 |
Target: 5'- cGGggGggGGGgacugGGGUg--GAGGGGg- -3' miRNA: 3'- -CCuuCuuUCCa----CCCGaagCUUCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 156015 | 0.7 | 0.934699 |
Target: 5'- aGAAGuuAGGccugGGGCcUCGGAGGGc- -3' miRNA: 3'- cCUUCuuUCCa---CCCGaAGCUUCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 142032 | 0.66 | 0.993884 |
Target: 5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3' miRNA: 3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 123 | 0.66 | 0.989428 |
Target: 5'- --cGGAGAG--GGGCUUCGucacgcAAGGGUGa -3' miRNA: 3'- ccuUCUUUCcaCCCGAAGC------UUCCCAC- -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 1945 | 0.66 | 0.98929 |
Target: 5'- aGGGugauuucGGAGAG--GGGCUUCGucacgcAAGGGUGa -3' miRNA: 3'- -CCU-------UCUUUCcaCCCGAAGC------UUCCCAC- -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 17 | 0.66 | 0.98929 |
Target: 5'- aGGGugauuucGGAGAG--GGGCUUCGuuacgcAAGGGUGa -3' miRNA: 3'- -CCU-------UCUUUCcaCCCGAAGC------UUCCCAC- -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 162404 | 0.67 | 0.987991 |
Target: 5'- uGGGAGuaacaaguGGUGGGCa-CGGgcuaGGGGUGu -3' miRNA: 3'- -CCUUCuuu-----CCACCCGaaGCU----UCCCAC- -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 136010 | 0.67 | 0.987991 |
Target: 5'- gGGAGGggGGGUaGGGggg-GGAGGGa- -3' miRNA: 3'- -CCUUCuuUCCA-CCCgaagCUUCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 156874 | 0.67 | 0.986409 |
Target: 5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3' miRNA: 3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 143581 | 0.66 | 0.992946 |
Target: 5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3' miRNA: 3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 146659 | 0.66 | 0.992946 |
Target: 5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3' miRNA: 3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 149736 | 0.66 | 0.992946 |
Target: 5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3' miRNA: 3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 153796 | 0.67 | 0.986409 |
Target: 5'- cGGggGAcAGGguggacgGGGCUggacUCGggGcGaGUGg -3' miRNA: 3'- -CCuuCUuUCCa------CCCGA----AGCuuC-C-CAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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