Results 21 - 40 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29046 | 5' | -51.6 | NC_006146.1 | + | 89568 | 0.66 | 0.992946 |
Target: 5'- cGGAAuuuGGAGGGUGGGg--CGGAGGa-- -3' miRNA: 3'- -CCUU---CUUUCCACCCgaaGCUUCCcac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 141439 | 0.66 | 0.992946 |
Target: 5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3' miRNA: 3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 41077 | 0.66 | 0.993884 |
Target: 5'- uGGAGGGAGGccaGGGacagCGAGGGGa- -3' miRNA: 3'- cCUUCUUUCCa--CCCgaa-GCUUCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 116746 | 0.66 | 0.993884 |
Target: 5'- aGGAGGAcgagGAGGaGGGCa--GggGGGc- -3' miRNA: 3'- -CCUUCU----UUCCaCCCGaagCuuCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 142032 | 0.66 | 0.993884 |
Target: 5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3' miRNA: 3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 145110 | 0.66 | 0.993884 |
Target: 5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3' miRNA: 3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 148188 | 0.66 | 0.993884 |
Target: 5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3' miRNA: 3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 151266 | 0.66 | 0.993884 |
Target: 5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3' miRNA: 3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 154344 | 0.66 | 0.993884 |
Target: 5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3' miRNA: 3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 157422 | 0.66 | 0.993884 |
Target: 5'- uGGAGAGGGGUGaGGaCUUUGGccucuGGGGc- -3' miRNA: 3'- cCUUCUUUCCAC-CC-GAAGCU-----UCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 39637 | 0.66 | 0.993238 |
Target: 5'- aGAAGAuggacuuGAGGUGGGCUgagacugccuuggccUUGGAGGcGg- -3' miRNA: 3'- cCUUCU-------UUCCACCCGA---------------AGCUUCC-Cac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 155892 | 0.66 | 0.992946 |
Target: 5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3' miRNA: 3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 144517 | 0.66 | 0.992946 |
Target: 5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3' miRNA: 3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 147595 | 0.66 | 0.992946 |
Target: 5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3' miRNA: 3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 153750 | 0.66 | 0.992946 |
Target: 5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3' miRNA: 3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 156828 | 0.66 | 0.992946 |
Target: 5'- cGggGAGGGGUGGGgagUGGccAGGGa- -3' miRNA: 3'- cCuuCUUUCCACCCgaaGCU--UCCCac -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 143581 | 0.66 | 0.992946 |
Target: 5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3' miRNA: 3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 146659 | 0.66 | 0.992946 |
Target: 5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3' miRNA: 3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 149736 | 0.66 | 0.992946 |
Target: 5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3' miRNA: 3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5' |
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29046 | 5' | -51.6 | NC_006146.1 | + | 152814 | 0.66 | 0.992946 |
Target: 5'- uGGAAGGuccGGU-GGCUUCGcuuGGGUc -3' miRNA: 3'- -CCUUCUuu-CCAcCCGAAGCuu-CCCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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