miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 136162 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 136348 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 136441 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 43646 0.66 0.585516
Target:  5'- cGUGGCCGCCUGGggagaggggCC-CGgCUcGCAUu -3'
miRNA:   3'- -UACCGGCGGGCCa--------GGuGCgGAuCGUG- -5'
29047 3' -63 NC_006146.1 + 68111 0.66 0.605107
Target:  5'- -gGGCgGCcagCCGGUCCGCGgUgagcGGCGCc -3'
miRNA:   3'- uaCCGgCG---GGCCAGGUGCgGa---UCGUG- -5'
29047 3' -63 NC_006146.1 + 70150 0.67 0.508846
Target:  5'- ---uUCGCCUGGcUCCugGCCggGGCGCu -3'
miRNA:   3'- uaccGGCGGGCC-AGGugCGGa-UCGUG- -5'
29047 3' -63 NC_006146.1 + 94648 0.67 0.508846
Target:  5'- gAUGGCCGCCCuGGggaCCACGa--AGCGg -3'
miRNA:   3'- -UACCGGCGGG-CCa--GGUGCggaUCGUg -5'
29047 3' -63 NC_006146.1 + 105377 0.67 0.508846
Target:  5'- -gGGCCaCCaGGUCU-CGCUUAGCACu -3'
miRNA:   3'- uaCCGGcGGgCCAGGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 55475 0.67 0.512589
Target:  5'- gAUGGCCgcgggcgagaacgagGCCCGGccgCCAgcUGCCUccuGCACg -3'
miRNA:   3'- -UACCGG---------------CGGGCCa--GGU--GCGGAu--CGUG- -5'
29047 3' -63 NC_006146.1 + 44586 0.67 0.518226
Target:  5'- cUGGCC-CCCGGgCCGCuGCCUuucccguuGCAUg -3'
miRNA:   3'- uACCGGcGGGCCaGGUG-CGGAu-------CGUG- -5'
29047 3' -63 NC_006146.1 + 121751 0.67 0.537185
Target:  5'- -aGGCUGCCCuGGaacCCguGCGCCUGGUg- -3'
miRNA:   3'- uaCCGGCGGG-CCa--GG--UGCGGAUCGug -5'
29047 3' -63 NC_006146.1 + 42790 0.67 0.546755
Target:  5'- cGUGGCCGCCuCGG-CCAgG-UUGGCGg -3'
miRNA:   3'- -UACCGGCGG-GCCaGGUgCgGAUCGUg -5'
29047 3' -63 NC_006146.1 + 115661 0.67 0.527674
Target:  5'- -gGGCCGCCCGGgCgACGUaccugAGgGCg -3'
miRNA:   3'- uaCCGGCGGGCCaGgUGCGga---UCgUG- -5'
29047 3' -63 NC_006146.1 + 125330 0.67 0.518226
Target:  5'- -aGGCCGCCUGG-CUGCGCg-AGCu- -3'
miRNA:   3'- uaCCGGCGGGCCaGGUGCGgaUCGug -5'
29047 3' -63 NC_006146.1 + 124781 0.67 0.518226
Target:  5'- -cGGCCaggGCCCGGg-CAUGCCUGcugcugcucGCGCg -3'
miRNA:   3'- uaCCGG---CGGGCCagGUGCGGAU---------CGUG- -5'
29047 3' -63 NC_006146.1 + 87587 0.67 0.524832
Target:  5'- aAUGGCC-UCaGGUCCGagcgaggaacccugUGCCUGGCGCg -3'
miRNA:   3'- -UACCGGcGGgCCAGGU--------------GCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 157742 0.67 0.527674
Target:  5'- -aGGuuGCCCGGcaCCACGUCUAugACg -3'
miRNA:   3'- uaCCggCGGGCCa-GGUGCGGAUcgUG- -5'
29047 3' -63 NC_006146.1 + 20943 0.67 0.518226
Target:  5'- cUGGCC-CCCacucCCACGCCUGGgCGCc -3'
miRNA:   3'- uACCGGcGGGcca-GGUGCGGAUC-GUG- -5'
29047 3' -63 NC_006146.1 + 128169 0.67 0.536231
Target:  5'- -cGGCagcacCGCCCGGaUCCGCGgCUgccagcccgagcgGGCGCu -3'
miRNA:   3'- uaCCG-----GCGGGCC-AGGUGCgGA-------------UCGUG- -5'
29047 3' -63 NC_006146.1 + 43336 0.67 0.546755
Target:  5'- -cGGCCGCCCaGGgCCA-GCa-GGCGCa -3'
miRNA:   3'- uaCCGGCGGG-CCaGGUgCGgaUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.