miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 121751 0.67 0.537185
Target:  5'- -aGGCUGCCCuGGaacCCguGCGCCUGGUg- -3'
miRNA:   3'- uaCCGGCGGG-CCa--GG--UGCGGAUCGug -5'
29047 3' -63 NC_006146.1 + 122572 0.67 0.546755
Target:  5'- cUGGaCGCCUGGcCCAccacCGCC-AGCACc -3'
miRNA:   3'- uACCgGCGGGCCaGGU----GCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 42790 0.67 0.546755
Target:  5'- cGUGGCCGCCuCGG-CCAgG-UUGGCGg -3'
miRNA:   3'- -UACCGGCGG-GCCaGGUgCgGAUCGUg -5'
29047 3' -63 NC_006146.1 + 33237 0.67 0.499538
Target:  5'- gGUGGCCGCCggcgGGUCCGCcggGCCgcuGCc- -3'
miRNA:   3'- -UACCGGCGGg---CCAGGUG---CGGau-CGug -5'
29047 3' -63 NC_006146.1 + 105377 0.67 0.508846
Target:  5'- -gGGCCaCCaGGUCU-CGCUUAGCACu -3'
miRNA:   3'- uaCCGGcGGgCCAGGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 47783 0.68 0.481156
Target:  5'- -gGGCCGUCUGaaagCCcCGUCUAGCGCc -3'
miRNA:   3'- uaCCGGCGGGCca--GGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 126888 0.68 0.463108
Target:  5'- -cGGCCGCCCccUCCcCGCCgcGCAa -3'
miRNA:   3'- uaCCGGCGGGccAGGuGCGGauCGUg -5'
29047 3' -63 NC_006146.1 + 72455 0.68 0.477518
Target:  5'- cUGGCC-CCCGGgCgGCGCCgaaaccgguucugGGCGCu -3'
miRNA:   3'- uACCGGcGGGCCaGgUGCGGa------------UCGUG- -5'
29047 3' -63 NC_006146.1 + 40651 0.68 0.481156
Target:  5'- cAUGGUgGCCCGGuUCCugGagaCUGGUg- -3'
miRNA:   3'- -UACCGgCGGGCC-AGGugCg--GAUCGug -5'
29047 3' -63 NC_006146.1 + 165954 0.68 0.490307
Target:  5'- cGUGGCC-CCUGGUCCccgGgGCacagAGCACg -3'
miRNA:   3'- -UACCGGcGGGCCAGG---UgCGga--UCGUG- -5'
29047 3' -63 NC_006146.1 + 17593 0.68 0.445421
Target:  5'- cUGGgCGaCCUGGcCCGgGCCUGGUGCc -3'
miRNA:   3'- uACCgGC-GGGCCaGGUgCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 96649 0.68 0.490307
Target:  5'- uUGGCCaGCCCGGggagacggCCGCGCagGGCc- -3'
miRNA:   3'- uACCGG-CGGGCCa-------GGUGCGgaUCGug -5'
29047 3' -63 NC_006146.1 + 50354 0.68 0.490307
Target:  5'- -cGGCCaGCCUGGggaUCUugGCC-AGCAg -3'
miRNA:   3'- uaCCGG-CGGGCC---AGGugCGGaUCGUg -5'
29047 3' -63 NC_006146.1 + 34081 0.68 0.481156
Target:  5'- -gGGCCGgggguCCCGGggggcagCCGCGaCCcAGCGCg -3'
miRNA:   3'- uaCCGGC-----GGGCCa------GGUGC-GGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 119260 0.68 0.481156
Target:  5'- cUGGCCcCCUGGgagUCCAgaGCCUggAGCACa -3'
miRNA:   3'- uACCGGcGGGCC---AGGUg-CGGA--UCGUG- -5'
29047 3' -63 NC_006146.1 + 51934 0.68 0.481156
Target:  5'- -gGGCgGCCCcggugcGGUCUGCGCgccaaCUGGCGCc -3'
miRNA:   3'- uaCCGgCGGG------CCAGGUGCG-----GAUCGUG- -5'
29047 3' -63 NC_006146.1 + 47218 0.68 0.463108
Target:  5'- cUGGCCGCCUccgCCACGaucuugagCUGGCGCg -3'
miRNA:   3'- uACCGGCGGGccaGGUGCg-------GAUCGUG- -5'
29047 3' -63 NC_006146.1 + 158828 0.68 0.472088
Target:  5'- -cGGCCgggGCCCGGcCCuCGCaaagcgAGCACa -3'
miRNA:   3'- uaCCGG---CGGGCCaGGuGCGga----UCGUG- -5'
29047 3' -63 NC_006146.1 + 120925 0.68 0.454218
Target:  5'- uGUGGCgG-CCGGUCCAaaaccgcggGCCUuGCACg -3'
miRNA:   3'- -UACCGgCgGGCCAGGUg--------CGGAuCGUG- -5'
29047 3' -63 NC_006146.1 + 82093 0.69 0.428119
Target:  5'- -aGGCCcagccacaacauGCCCagcaGGcUCCACGCCcugUAGCACa -3'
miRNA:   3'- uaCCGG------------CGGG----CC-AGGUGCGG---AUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.