miRNA display CGI


Results 101 - 120 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 24057 0.69 0.394742
Target:  5'- -cGGCCccgagccagGCCCGGgcUCUACGC-UGGCGCg -3'
miRNA:   3'- uaCCGG---------CGGGCC--AGGUGCGgAUCGUG- -5'
29047 3' -63 NC_006146.1 + 82093 0.69 0.428119
Target:  5'- -aGGCCcagccacaacauGCCCagcaGGcUCCACGCCcugUAGCACa -3'
miRNA:   3'- uaCCGG------------CGGG----CC-AGGUGCGG---AUCGUG- -5'
29047 3' -63 NC_006146.1 + 98320 0.69 0.436721
Target:  5'- cGUGGCCGUCUGGcaCgGgGCCgGGCGCg -3'
miRNA:   3'- -UACCGGCGGGCCa-GgUgCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 123905 0.69 0.394742
Target:  5'- -gGGCCGCugCCGGUCCgACGggcgcaauuCCUGGCGg -3'
miRNA:   3'- uaCCGGCG--GGCCAGG-UGC---------GGAUCGUg -5'
29047 3' -63 NC_006146.1 + 21622 0.69 0.402928
Target:  5'- gAUGGCCGaggaCCCGGcCUACGCggagcGGCACg -3'
miRNA:   3'- -UACCGGC----GGGCCaGGUGCGga---UCGUG- -5'
29047 3' -63 NC_006146.1 + 105691 0.69 0.410386
Target:  5'- cUGGaCGCCCGGgcUCCcagggcccccagaGCGCCUAGgGCu -3'
miRNA:   3'- uACCgGCGGGCC--AGG-------------UGCGGAUCgUG- -5'
29047 3' -63 NC_006146.1 + 43277 0.69 0.436721
Target:  5'- -gGGCgGCCUggaGGUCCGgcaggUGCCUAGCGu -3'
miRNA:   3'- uaCCGgCGGG---CCAGGU-----GCGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 45552 0.7 0.370839
Target:  5'- uUGGCCGCCCuGGccUCCGCGaggagCUcGCGCa -3'
miRNA:   3'- uACCGGCGGG-CC--AGGUGCg----GAuCGUG- -5'
29047 3' -63 NC_006146.1 + 32872 0.7 0.378696
Target:  5'- -gGGCggCGCgaGGUCCcUGCCUGGCACc -3'
miRNA:   3'- uaCCG--GCGggCCAGGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 103821 0.7 0.370839
Target:  5'- gGUGGCCGCCgaccccuucuCGG-CC-CGUCUGGCAg -3'
miRNA:   3'- -UACCGGCGG----------GCCaGGuGCGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 40374 0.7 0.370839
Target:  5'- -aGGCCcCCUGGUCgC-CGCCcGGCGCg -3'
miRNA:   3'- uaCCGGcGGGCCAG-GuGCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 106037 0.7 0.340539
Target:  5'- cGUGGCCGCCCa-UCCGgacauuggaGCCUGGCAg -3'
miRNA:   3'- -UACCGGCGGGccAGGUg--------CGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 39403 0.7 0.378696
Target:  5'- -gGGCCcuuuCCCGGUCgAUcCCUGGCACc -3'
miRNA:   3'- uaCCGGc---GGGCCAGgUGcGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 16263 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 19341 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 22419 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 25497 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 28575 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 13185 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 103571 0.7 0.340539
Target:  5'- -gGGCuCGCCCGGgccugggCCGgGCUcAGCGCg -3'
miRNA:   3'- uaCCG-GCGGGCCa------GGUgCGGaUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.