Results 121 - 131 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29047 | 3' | -63 | NC_006146.1 | + | 9462 | 0.71 | 0.319016 |
Target: 5'- gGUGGgCGCggGGUCCGCGCCcucUGGCAUc -3' miRNA: 3'- -UACCgGCGggCCAGGUGCGG---AUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 92994 | 0.71 | 0.312073 |
Target: 5'- -aGGCCGCCCGcccCUGCGCCUguuaAGCAg -3' miRNA: 3'- uaCCGGCGGGCca-GGUGCGGA----UCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33187 | 0.71 | 0.319016 |
Target: 5'- --cGCCGCUCGGUCCugGgCCUccgGGUGCu -3' miRNA: 3'- uacCGGCGGGCCAGGugC-GGA---UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 54782 | 0.71 | 0.326075 |
Target: 5'- -gGGCCGCCagGGagCGCGCCUugGGCAg -3' miRNA: 3'- uaCCGGCGGg-CCagGUGCGGA--UCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 15415 | 0.73 | 0.232154 |
Target: 5'- gGUGGCCucagaggggcugGCCCGGcugcagUCC-UGCCUGGCGCa -3' miRNA: 3'- -UACCGG------------CGGGCC------AGGuGCGGAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 67207 | 0.73 | 0.232154 |
Target: 5'- cUGGCCGUggCCGGUcgCCugGCCggccaGGCACa -3' miRNA: 3'- uACCGGCG--GGCCA--GGugCGGa----UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 2095 | 0.75 | 0.18749 |
Target: 5'- -gGGCCGcCCCGGggcucccCCGCGCCgaucugAGCGCc -3' miRNA: 3'- uaCCGGC-GGGCCa------GGUGCGGa-----UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 3027 | 0.75 | 0.18749 |
Target: 5'- -gGGCCGcCCCGGggcucccCCGCGCCgaucugAGCGCc -3' miRNA: 3'- uaCCGGC-GGGCCa------GGUGCGGa-----UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 1163 | 0.75 | 0.18749 |
Target: 5'- -gGGCCGcCCCGGggcucccCCGCGCCgaucugAGCGCc -3' miRNA: 3'- uaCCGGC-GGGCCa------GGUGCGGa-----UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 81775 | 0.76 | 0.139809 |
Target: 5'- cAUGGCCGCCCGGUCUcCGggggugccaCCUGGgGCa -3' miRNA: 3'- -UACCGGCGGGCCAGGuGC---------GGAUCgUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 86529 | 1.06 | 0.001066 |
Target: 5'- gAUGGCCGCCCGGUCCACGCCUAGCACc -3' miRNA: 3'- -UACCGGCGGGCCAGGUGCGGAUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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