Results 41 - 60 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29047 | 3' | -63 | NC_006146.1 | + | 119260 | 0.68 | 0.481156 |
Target: 5'- cUGGCCcCCUGGgagUCCAgaGCCUggAGCACa -3' miRNA: 3'- uACCGGcGGGCC---AGGUg-CGGA--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 72455 | 0.68 | 0.477518 |
Target: 5'- cUGGCC-CCCGGgCgGCGCCgaaaccgguucugGGCGCu -3' miRNA: 3'- uACCGGcGGGCCaGgUGCGGa------------UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 120925 | 0.68 | 0.454218 |
Target: 5'- uGUGGCgG-CCGGUCCAaaaccgcggGCCUuGCACg -3' miRNA: 3'- -UACCGgCgGGCCAGGUg--------CGGAuCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 40651 | 0.68 | 0.481156 |
Target: 5'- cAUGGUgGCCCGGuUCCugGagaCUGGUg- -3' miRNA: 3'- -UACCGgCGGGCC-AGGugCg--GAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 126888 | 0.68 | 0.463108 |
Target: 5'- -cGGCCGCCCccUCCcCGCCgcGCAa -3' miRNA: 3'- uaCCGGCGGGccAGGuGCGGauCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 165954 | 0.68 | 0.490307 |
Target: 5'- cGUGGCC-CCUGGUCCccgGgGCacagAGCACg -3' miRNA: 3'- -UACCGGcGGGCCAGG---UgCGga--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33974 | 0.67 | 0.499538 |
Target: 5'- cGUGGuCCGCUgGGUCCGCugguCCgguGCACc -3' miRNA: 3'- -UACC-GGCGGgCCAGGUGc---GGau-CGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 125330 | 0.67 | 0.518226 |
Target: 5'- -aGGCCGCCUGG-CUGCGCg-AGCu- -3' miRNA: 3'- uaCCGGCGGGCCaGGUGCGgaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 124781 | 0.67 | 0.518226 |
Target: 5'- -cGGCCaggGCCCGGg-CAUGCCUGcugcugcucGCGCg -3' miRNA: 3'- uaCCGG---CGGGCCagGUGCGGAU---------CGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 94648 | 0.67 | 0.508846 |
Target: 5'- gAUGGCCGCCCuGGggaCCACGa--AGCGg -3' miRNA: 3'- -UACCGGCGGG-CCa--GGUGCggaUCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33359 | 0.67 | 0.499538 |
Target: 5'- gGUGGCCGCCggugGGUCCGCcggGCCgcuGCc- -3' miRNA: 3'- -UACCGGCGGg---CCAGGUG---CGGau-CGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 70150 | 0.67 | 0.508846 |
Target: 5'- ---uUCGCCUGGcUCCugGCCggGGCGCu -3' miRNA: 3'- uaccGGCGGGCC-AGGugCGGa-UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 105377 | 0.67 | 0.508846 |
Target: 5'- -gGGCCaCCaGGUCU-CGCUUAGCACu -3' miRNA: 3'- uaCCGGcGGgCCAGGuGCGGAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 20943 | 0.67 | 0.518226 |
Target: 5'- cUGGCC-CCCacucCCACGCCUGGgCGCc -3' miRNA: 3'- uACCGGcGGGcca-GGUGCGGAUC-GUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 42790 | 0.67 | 0.546755 |
Target: 5'- cGUGGCCGCCuCGG-CCAgG-UUGGCGg -3' miRNA: 3'- -UACCGGCGG-GCCaGGUgCgGAUCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 122572 | 0.67 | 0.546755 |
Target: 5'- cUGGaCGCCUGGcCCAccacCGCC-AGCACc -3' miRNA: 3'- uACCgGCGGGCCaGGU----GCGGaUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 121751 | 0.67 | 0.537185 |
Target: 5'- -aGGCUGCCCuGGaacCCguGCGCCUGGUg- -3' miRNA: 3'- uaCCGGCGGG-CCa--GG--UGCGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 128169 | 0.67 | 0.536231 |
Target: 5'- -cGGCagcacCGCCCGGaUCCGCGgCUgccagcccgagcgGGCGCu -3' miRNA: 3'- uaCCG-----GCGGGCC-AGGUGCgGA-------------UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 115661 | 0.67 | 0.527674 |
Target: 5'- -gGGCCGCCCGGgCgACGUaccugAGgGCg -3' miRNA: 3'- uaCCGGCGGGCCaGgUGCGga---UCgUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33237 | 0.67 | 0.499538 |
Target: 5'- gGUGGCCGCCggcgGGUCCGCcggGCCgcuGCc- -3' miRNA: 3'- -UACCGGCGGg---CCAGGUG---CGGau-CGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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