miRNA display CGI


Results 121 - 131 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 136720 0.66 0.584539
Target:  5'- gGUGGCCggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG-------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 112976 0.66 0.575764
Target:  5'- cAUGGCgGCgCCGG-CCAgCGCCcucuGCAUg -3'
miRNA:   3'- -UACCGgCG-GGCCaGGU-GCGGau--CGUG- -5'
29047 3' -63 NC_006146.1 + 156358 0.66 0.574791
Target:  5'- -cGGCCcagcagcuccaggGCCCGGUCCAgGCuCUccAGCc- -3'
miRNA:   3'- uaCCGG-------------CGGGCCAGGUgCG-GA--UCGug -5'
29047 3' -63 NC_006146.1 + 60007 0.66 0.56605
Target:  5'- -aGGCCaacgcgGCCCcGUCCcCGCCU-GCGCc -3'
miRNA:   3'- uaCCGG------CGGGcCAGGuGCGGAuCGUG- -5'
29047 3' -63 NC_006146.1 + 57394 0.66 0.56605
Target:  5'- cUGGCCccgcgaccguGCCCGGccgaCgCACGCCUcuacguGGCGCu -3'
miRNA:   3'- uACCGG----------CGGGCCa---G-GUGCGGA------UCGUG- -5'
29047 3' -63 NC_006146.1 + 48227 0.66 0.56605
Target:  5'- cUGGCgCGCCUGGgugagcgCCGCGCggAGgGCc -3'
miRNA:   3'- uACCG-GCGGGCCa------GGUGCGgaUCgUG- -5'
29047 3' -63 NC_006146.1 + 33537 0.66 0.56605
Target:  5'- -aGGUugUGCCCGGcuugCCugGCCcUGGUGCu -3'
miRNA:   3'- uaCCG--GCGGGCCa---GGugCGG-AUCGUG- -5'
29047 3' -63 NC_006146.1 + 157339 0.66 0.556378
Target:  5'- -cGGCCugcuugcgcaGCCCGGcgCCcgGCGCCUgcAGCAg -3'
miRNA:   3'- uaCCGG----------CGGGCCa-GG--UGCGGA--UCGUg -5'
29047 3' -63 NC_006146.1 + 67314 0.66 0.555414
Target:  5'- -gGGCCacguccgcgcugaGCCCGGcCCAgGCCcgGGCGa -3'
miRNA:   3'- uaCCGG-------------CGGGCCaGGUgCGGa-UCGUg -5'
29047 3' -63 NC_006146.1 + 13427 0.66 0.56605
Target:  5'- -aGGcCCGCCCGGUCauCACGCU--GCcCg -3'
miRNA:   3'- uaCC-GGCGGGCCAG--GUGCGGauCGuG- -5'
29047 3' -63 NC_006146.1 + 155190 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.