Results 121 - 131 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29047 | 3' | -63 | NC_006146.1 | + | 68111 | 0.66 | 0.605107 |
Target: 5'- -gGGCgGCcagCCGGUCCGCGgUgagcGGCGCc -3' miRNA: 3'- uaCCGgCG---GGCCAGGUGCgGa---UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 160617 | 0.66 | 0.605107 |
Target: 5'- -cGGCCGCCUGG--CAUGCC-AGCu- -3' miRNA: 3'- uaCCGGCGGGCCagGUGCGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 158269 | 0.66 | 0.614934 |
Target: 5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3' miRNA: 3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 41590 | 0.66 | 0.614934 |
Target: 5'- cUGGCCgaggcggagagGCCCGGggggcuggUCCGCuggGCCcgGGCGCa -3' miRNA: 3'- uACCGG-----------CGGGCC--------AGGUG---CGGa-UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 61518 | 0.66 | 0.614934 |
Target: 5'- --uGCCGCCCuGUcauucagaaaCCugGCCUacgGGCGCa -3' miRNA: 3'- uacCGGCGGGcCA----------GGugCGGA---UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 142878 | 0.66 | 0.614934 |
Target: 5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3' miRNA: 3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 145956 | 0.66 | 0.614934 |
Target: 5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3' miRNA: 3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 149034 | 0.66 | 0.614934 |
Target: 5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3' miRNA: 3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 152112 | 0.66 | 0.614934 |
Target: 5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3' miRNA: 3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 155190 | 0.66 | 0.614934 |
Target: 5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3' miRNA: 3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 137913 | 0.66 | 0.614934 |
Target: 5'- -gGGCCGgggguUCCGGgggcagCCGCGaCCcAGCGCg -3' miRNA: 3'- uaCCGGC-----GGGCCa-----GGUGC-GGaUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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