Results 101 - 120 of 131 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29047 | 3' | -63 | NC_006146.1 | + | 98320 | 0.69 | 0.436721 |
Target: 5'- cGUGGCCGUCUGGcaCgGgGCCgGGCGCg -3' miRNA: 3'- -UACCGGCGGGCCa-GgUgCGGaUCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 43277 | 0.69 | 0.436721 |
Target: 5'- -gGGCgGCCUggaGGUCCGgcaggUGCCUAGCGu -3' miRNA: 3'- uaCCGgCGGG---CCAGGU-----GCGGAUCGUg -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 82093 | 0.69 | 0.428119 |
Target: 5'- -aGGCCcagccacaacauGCCCagcaGGcUCCACGCCcugUAGCACa -3' miRNA: 3'- uaCCGG------------CGGG----CC-AGGUGCGG---AUCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 105691 | 0.69 | 0.410386 |
Target: 5'- cUGGaCGCCCGGgcUCCcagggcccccagaGCGCCUAGgGCu -3' miRNA: 3'- uACCgGCGGGCC--AGG-------------UGCGGAUCgUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 21622 | 0.69 | 0.402928 |
Target: 5'- gAUGGCCGaggaCCCGGcCUACGCggagcGGCACg -3' miRNA: 3'- -UACCGGC----GGGCCaGGUGCGga---UCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 123905 | 0.69 | 0.394742 |
Target: 5'- -gGGCCGCugCCGGUCCgACGggcgcaauuCCUGGCGg -3' miRNA: 3'- uaCCGGCG--GGCCAGG-UGC---------GGAUCGUg -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 24057 | 0.69 | 0.394742 |
Target: 5'- -cGGCCccgagccagGCCCGGgcUCUACGC-UGGCGCg -3' miRNA: 3'- uaCCGG---------CGGGCC--AGGUGCGgAUCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 39403 | 0.7 | 0.378696 |
Target: 5'- -gGGCCcuuuCCCGGUCgAUcCCUGGCACc -3' miRNA: 3'- uaCCGGc---GGGCCAGgUGcGGAUCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 32872 | 0.7 | 0.378696 |
Target: 5'- -gGGCggCGCgaGGUCCcUGCCUGGCACc -3' miRNA: 3'- uaCCG--GCGggCCAGGuGCGGAUCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 22419 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 19341 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 16263 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 28575 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 25497 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 45552 | 0.7 | 0.370839 |
Target: 5'- uUGGCCGCCCuGGccUCCGCGaggagCUcGCGCa -3' miRNA: 3'- uACCGGCGGG-CC--AGGUGCg----GAuCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 40374 | 0.7 | 0.370839 |
Target: 5'- -aGGCCcCCUGGUCgC-CGCCcGGCGCg -3' miRNA: 3'- uaCCGGcGGGCCAG-GuGCGGaUCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 103821 | 0.7 | 0.370839 |
Target: 5'- gGUGGCCGCCgaccccuucuCGG-CC-CGUCUGGCAg -3' miRNA: 3'- -UACCGGCGG----------GCCaGGuGCGGAUCGUg -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 13185 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 106037 | 0.7 | 0.340539 |
Target: 5'- cGUGGCCGCCCa-UCCGgacauuggaGCCUGGCAg -3' miRNA: 3'- -UACCGGCGGGccAGGUg--------CGGAUCGUg -5' |
|||||||
29047 | 3' | -63 | NC_006146.1 | + | 103571 | 0.7 | 0.340539 |
Target: 5'- -gGGCuCGCCCGGgccugggCCGgGCUcAGCGCg -3' miRNA: 3'- uaCCG-GCGGGCCa------GGUgCGGaUCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home