miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 123905 0.69 0.394742
Target:  5'- -gGGCCGCugCCGGUCCgACGggcgcaauuCCUGGCGg -3'
miRNA:   3'- uaCCGGCG--GGCCAGG-UGC---------GGAUCGUg -5'
29047 3' -63 NC_006146.1 + 124130 0.66 0.585516
Target:  5'- cGUGGCUGUgCGGUggCGCGUUUGGCAg -3'
miRNA:   3'- -UACCGGCGgGCCAg-GUGCGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 124781 0.67 0.518226
Target:  5'- -cGGCCaggGCCCGGg-CAUGCCUGcugcugcucGCGCg -3'
miRNA:   3'- uaCCGG---CGGGCCagGUGCGGAU---------CGUG- -5'
29047 3' -63 NC_006146.1 + 125330 0.67 0.518226
Target:  5'- -aGGCCGCCUGG-CUGCGCg-AGCu- -3'
miRNA:   3'- uaCCGGCGGGCCaGGUGCGgaUCGug -5'
29047 3' -63 NC_006146.1 + 126888 0.68 0.463108
Target:  5'- -cGGCCGCCCccUCCcCGCCgcGCAa -3'
miRNA:   3'- uaCCGGCGGGccAGGuGCGGauCGUg -5'
29047 3' -63 NC_006146.1 + 128169 0.67 0.536231
Target:  5'- -cGGCagcacCGCCCGGaUCCGCGgCUgccagcccgagcgGGCGCu -3'
miRNA:   3'- uaCCG-----GCGGGCC-AGGUGCgGA-------------UCGUG- -5'
29047 3' -63 NC_006146.1 + 135140 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135233 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135326 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135419 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135512 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135605 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135790 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135883 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135976 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 136069 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 136162 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 136255 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 136348 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 136441 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.