Results 101 - 120 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29047 | 3' | -63 | NC_006146.1 | + | 136534 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 136627 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 136720 | 0.66 | 0.584539 |
Target: 5'- gGUGGCCggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG-------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 136812 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 136905 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 136998 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 137091 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 137184 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 137277 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 137370 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 137463 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 137556 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 137913 | 0.66 | 0.614934 |
Target: 5'- -gGGCCGgggguUCCGGgggcagCCGCGaCCcAGCGCg -3' miRNA: 3'- uaCCGGC-----GGGCCa-----GGUGC-GGaUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 142878 | 0.66 | 0.614934 |
Target: 5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3' miRNA: 3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 145956 | 0.66 | 0.614934 |
Target: 5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3' miRNA: 3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 149034 | 0.66 | 0.614934 |
Target: 5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3' miRNA: 3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 152112 | 0.66 | 0.614934 |
Target: 5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3' miRNA: 3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 155190 | 0.66 | 0.614934 |
Target: 5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3' miRNA: 3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 155566 | 0.66 | 0.595299 |
Target: 5'- -gGGCuCGCgCGGggcgCC-CGCCaggGGCACa -3' miRNA: 3'- uaCCG-GCGgGCCa---GGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 156358 | 0.66 | 0.574791 |
Target: 5'- -cGGCCcagcagcuccaggGCCCGGUCCAgGCuCUccAGCc- -3' miRNA: 3'- uaCCGG-------------CGGGCCAGGUgCG-GA--UCGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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