Results 121 - 131 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29047 | 3' | -63 | NC_006146.1 | + | 156723 | 0.66 | 0.585516 |
Target: 5'- -aGGCU-CCgggGGUCCA-GCCUGGCGCa -3' miRNA: 3'- uaCCGGcGGg--CCAGGUgCGGAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 157339 | 0.66 | 0.556378 |
Target: 5'- -cGGCCugcuugcgcaGCCCGGcgCCcgGCGCCUgcAGCAg -3' miRNA: 3'- uaCCGG----------CGGGCCa-GG--UGCGGA--UCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 157742 | 0.67 | 0.527674 |
Target: 5'- -aGGuuGCCCGGcaCCACGUCUAugACg -3' miRNA: 3'- uaCCggCGGGCCa-GGUGCGGAUcgUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 158269 | 0.66 | 0.614934 |
Target: 5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3' miRNA: 3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 158828 | 0.68 | 0.472088 |
Target: 5'- -cGGCCgggGCCCGGcCCuCGCaaagcgAGCACa -3' miRNA: 3'- uaCCGG---CGGGCCaGGuGCGga----UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 160617 | 0.66 | 0.605107 |
Target: 5'- -cGGCCGCCUGG--CAUGCC-AGCu- -3' miRNA: 3'- uaCCGGCGGGCCagGUGCGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 161752 | 0.66 | 0.595299 |
Target: 5'- gGUGGCgGCUgaGGUCCgaggggGCGCCUgGGCGg -3' miRNA: 3'- -UACCGgCGGg-CCAGG------UGCGGA-UCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 165954 | 0.68 | 0.490307 |
Target: 5'- cGUGGCC-CCUGGUCCccgGgGCacagAGCACg -3' miRNA: 3'- -UACCGGcGGGCCAGG---UgCGga--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 167891 | 0.66 | 0.595299 |
Target: 5'- -gGGCgGCCCGGggacCCuCGCgggGGCACc -3' miRNA: 3'- uaCCGgCGGGCCa---GGuGCGga-UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 168823 | 0.66 | 0.595299 |
Target: 5'- -gGGCgGCCCGGggacCCuCGCgggGGCACc -3' miRNA: 3'- uaCCGgCGGGCCa---GGuGCGga-UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 169755 | 0.66 | 0.595299 |
Target: 5'- -gGGCgGCCCGGggacCCuCGCgggGGCACc -3' miRNA: 3'- uaCCGgCGGGCCa---GGuGCGga-UCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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