miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 112976 0.66 0.575764
Target:  5'- cAUGGCgGCgCCGG-CCAgCGCCcucuGCAUg -3'
miRNA:   3'- -UACCGgCG-GGCCaGGU-GCGGau--CGUG- -5'
29047 3' -63 NC_006146.1 + 112901 0.66 0.605107
Target:  5'- -aGGCCGagaCCCGGgccUCCAgcuCGuCCUGGUGCg -3'
miRNA:   3'- uaCCGGC---GGGCC---AGGU---GC-GGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 106037 0.7 0.340539
Target:  5'- cGUGGCCGCCCa-UCCGgacauuggaGCCUGGCAg -3'
miRNA:   3'- -UACCGGCGGGccAGGUg--------CGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 105691 0.69 0.410386
Target:  5'- cUGGaCGCCCGGgcUCCcagggcccccagaGCGCCUAGgGCu -3'
miRNA:   3'- uACCgGCGGGCC--AGG-------------UGCGGAUCgUG- -5'
29047 3' -63 NC_006146.1 + 105600 0.66 0.602162
Target:  5'- -aGGCCGCaagaggcagcgcagCCaGGUCCACaGCC--GCACg -3'
miRNA:   3'- uaCCGGCG--------------GG-CCAGGUG-CGGauCGUG- -5'
29047 3' -63 NC_006146.1 + 105377 0.67 0.508846
Target:  5'- -gGGCCaCCaGGUCU-CGCUUAGCACu -3'
miRNA:   3'- uaCCGGcGGgCCAGGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 103821 0.7 0.370839
Target:  5'- gGUGGCCGCCgaccccuucuCGG-CC-CGUCUGGCAg -3'
miRNA:   3'- -UACCGGCGG----------GCCaGGuGCGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 103571 0.7 0.340539
Target:  5'- -gGGCuCGCCCGGgccugggCCGgGCUcAGCGCg -3'
miRNA:   3'- uaCCG-GCGGGCCa------GGUgCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 98647 0.69 0.436721
Target:  5'- gAUGGCCaucagcagacaGCCUGGUCCccgUGCCUucacGCGCa -3'
miRNA:   3'- -UACCGG-----------CGGGCCAGGu--GCGGAu---CGUG- -5'
29047 3' -63 NC_006146.1 + 98320 0.69 0.436721
Target:  5'- cGUGGCCGUCUGGcaCgGgGCCgGGCGCg -3'
miRNA:   3'- -UACCGGCGGGCCa-GgUgCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 96649 0.68 0.490307
Target:  5'- uUGGCCaGCCCGGggagacggCCGCGCagGGCc- -3'
miRNA:   3'- uACCGG-CGGGCCa-------GGUGCGgaUCGug -5'
29047 3' -63 NC_006146.1 + 94648 0.67 0.508846
Target:  5'- gAUGGCCGCCCuGGggaCCACGa--AGCGg -3'
miRNA:   3'- -UACCGGCGGG-CCa--GGUGCggaUCGUg -5'
29047 3' -63 NC_006146.1 + 92994 0.71 0.312073
Target:  5'- -aGGCCGCCCGcccCUGCGCCUguuaAGCAg -3'
miRNA:   3'- uaCCGGCGGGCca-GGUGCGGA----UCGUg -5'
29047 3' -63 NC_006146.1 + 90118 0.66 0.605107
Target:  5'- -gGGCCuCCUcugGGguaucUCCAUGCCUGGUGCg -3'
miRNA:   3'- uaCCGGcGGG---CC-----AGGUGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 87587 0.67 0.524832
Target:  5'- aAUGGCC-UCaGGUCCGagcgaggaacccugUGCCUGGCGCg -3'
miRNA:   3'- -UACCGGcGGgCCAGGU--------------GCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 86529 1.06 0.001066
Target:  5'- gAUGGCCGCCCGGUCCACGCCUAGCACc -3'
miRNA:   3'- -UACCGGCGGGCCAGGUGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 82093 0.69 0.428119
Target:  5'- -aGGCCcagccacaacauGCCCagcaGGcUCCACGCCcugUAGCACa -3'
miRNA:   3'- uaCCGG------------CGGG----CC-AGGUGCGG---AUCGUG- -5'
29047 3' -63 NC_006146.1 + 81775 0.76 0.139809
Target:  5'- cAUGGCCGCCCGGUCUcCGggggugccaCCUGGgGCa -3'
miRNA:   3'- -UACCGGCGGGCCAGGuGC---------GGAUCgUG- -5'
29047 3' -63 NC_006146.1 + 72455 0.68 0.477518
Target:  5'- cUGGCC-CCCGGgCgGCGCCgaaaccgguucugGGCGCu -3'
miRNA:   3'- uACCGGcGGGCCaGgUGCGGa------------UCGUG- -5'
29047 3' -63 NC_006146.1 + 70150 0.67 0.508846
Target:  5'- ---uUCGCCUGGcUCCugGCCggGGCGCu -3'
miRNA:   3'- uaccGGCGGGCC-AGGugCGGa-UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.