miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 68111 0.66 0.605107
Target:  5'- -gGGCgGCcagCCGGUCCGCGgUgagcGGCGCc -3'
miRNA:   3'- uaCCGgCG---GGCCAGGUGCgGa---UCGUG- -5'
29047 3' -63 NC_006146.1 + 67314 0.66 0.555414
Target:  5'- -gGGCCacguccgcgcugaGCCCGGcCCAgGCCcgGGCGa -3'
miRNA:   3'- uaCCGG-------------CGGGCCaGGUgCGGa-UCGUg -5'
29047 3' -63 NC_006146.1 + 67207 0.73 0.232154
Target:  5'- cUGGCCGUggCCGGUcgCCugGCCggccaGGCACa -3'
miRNA:   3'- uACCGGCG--GGCCA--GGugCGGa----UCGUG- -5'
29047 3' -63 NC_006146.1 + 61518 0.66 0.614934
Target:  5'- --uGCCGCCCuGUcauucagaaaCCugGCCUacgGGCGCa -3'
miRNA:   3'- uacCGGCGGGcCA----------GGugCGGA---UCGUG- -5'
29047 3' -63 NC_006146.1 + 60007 0.66 0.56605
Target:  5'- -aGGCCaacgcgGCCCcGUCCcCGCCU-GCGCc -3'
miRNA:   3'- uaCCGG------CGGGcCAGGuGCGGAuCGUG- -5'
29047 3' -63 NC_006146.1 + 57394 0.66 0.56605
Target:  5'- cUGGCCccgcgaccguGCCCGGccgaCgCACGCCUcuacguGGCGCu -3'
miRNA:   3'- uACCGG----------CGGGCCa---G-GUGCGGA------UCGUG- -5'
29047 3' -63 NC_006146.1 + 57150 0.66 0.585516
Target:  5'- gGUGGCCGaCCGccgcuUCCACGCCUuccuCACc -3'
miRNA:   3'- -UACCGGCgGGCc----AGGUGCGGAuc--GUG- -5'
29047 3' -63 NC_006146.1 + 55475 0.67 0.512589
Target:  5'- gAUGGCCgcgggcgagaacgagGCCCGGccgCCAgcUGCCUccuGCACg -3'
miRNA:   3'- -UACCGG---------------CGGGCCa--GGU--GCGGAu--CGUG- -5'
29047 3' -63 NC_006146.1 + 54782 0.71 0.326075
Target:  5'- -gGGCCGCCagGGagCGCGCCUugGGCAg -3'
miRNA:   3'- uaCCGGCGGg-CCagGUGCGGA--UCGUg -5'
29047 3' -63 NC_006146.1 + 51934 0.68 0.481156
Target:  5'- -gGGCgGCCCcggugcGGUCUGCGCgccaaCUGGCGCc -3'
miRNA:   3'- uaCCGgCGGG------CCAGGUGCG-----GAUCGUG- -5'
29047 3' -63 NC_006146.1 + 50354 0.68 0.490307
Target:  5'- -cGGCCaGCCUGGggaUCUugGCC-AGCAg -3'
miRNA:   3'- uaCCGG-CGGGCC---AGGugCGGaUCGUg -5'
29047 3' -63 NC_006146.1 + 48227 0.66 0.56605
Target:  5'- cUGGCgCGCCUGGgugagcgCCGCGCggAGgGCc -3'
miRNA:   3'- uACCG-GCGGGCCa------GGUGCGgaUCgUG- -5'
29047 3' -63 NC_006146.1 + 47783 0.68 0.481156
Target:  5'- -gGGCCGUCUGaaagCCcCGUCUAGCGCc -3'
miRNA:   3'- uaCCGGCGGGCca--GGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 47218 0.68 0.463108
Target:  5'- cUGGCCGCCUccgCCACGaucuugagCUGGCGCg -3'
miRNA:   3'- uACCGGCGGGccaGGUGCg-------GAUCGUG- -5'
29047 3' -63 NC_006146.1 + 45552 0.7 0.370839
Target:  5'- uUGGCCGCCCuGGccUCCGCGaggagCUcGCGCa -3'
miRNA:   3'- uACCGGCGGG-CC--AGGUGCg----GAuCGUG- -5'
29047 3' -63 NC_006146.1 + 44586 0.67 0.518226
Target:  5'- cUGGCC-CCCGGgCCGCuGCCUuucccguuGCAUg -3'
miRNA:   3'- uACCGGcGGGCCaGGUG-CGGAu-------CGUG- -5'
29047 3' -63 NC_006146.1 + 43646 0.66 0.585516
Target:  5'- cGUGGCCGCCUGGggagaggggCC-CGgCUcGCAUu -3'
miRNA:   3'- -UACCGGCGGGCCa--------GGuGCgGAuCGUG- -5'
29047 3' -63 NC_006146.1 + 43336 0.67 0.546755
Target:  5'- -cGGCCGCCCaGGgCCA-GCa-GGCGCa -3'
miRNA:   3'- uaCCGGCGGG-CCaGGUgCGgaUCGUG- -5'
29047 3' -63 NC_006146.1 + 43277 0.69 0.436721
Target:  5'- -gGGCgGCCUggaGGUCCGgcaggUGCCUAGCGu -3'
miRNA:   3'- uaCCGgCGGG---CCAGGU-----GCGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 42790 0.67 0.546755
Target:  5'- cGUGGCCGCCuCGG-CCAgG-UUGGCGg -3'
miRNA:   3'- -UACCGGCGG-GCCaGGUgCgGAUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.