Results 101 - 120 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29047 | 3' | -63 | NC_006146.1 | + | 42067 | 0.66 | 0.601181 |
Target: 5'- cUGGCCGggcuuaccugcuCCUGGaCCGCGCCguccuucgcggacGGCGCa -3' miRNA: 3'- uACCGGC------------GGGCCaGGUGCGGa------------UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 41590 | 0.66 | 0.614934 |
Target: 5'- cUGGCCgaggcggagagGCCCGGggggcuggUCCGCuggGCCcgGGCGCa -3' miRNA: 3'- uACCGG-----------CGGGCC--------AGGUG---CGGa-UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 40976 | 0.66 | 0.585516 |
Target: 5'- -aGaCCGCCgUGGUgCCGCGCC-GGCGCc -3' miRNA: 3'- uaCcGGCGG-GCCA-GGUGCGGaUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 40651 | 0.68 | 0.481156 |
Target: 5'- cAUGGUgGCCCGGuUCCugGagaCUGGUg- -3' miRNA: 3'- -UACCGgCGGGCC-AGGugCg--GAUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 40374 | 0.7 | 0.370839 |
Target: 5'- -aGGCCcCCUGGUCgC-CGCCcGGCGCg -3' miRNA: 3'- uaCCGGcGGGCCAG-GuGCGGaUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 39403 | 0.7 | 0.378696 |
Target: 5'- -gGGCCcuuuCCCGGUCgAUcCCUGGCACc -3' miRNA: 3'- uaCCGGc---GGGCCAGgUGcGGAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 34081 | 0.68 | 0.481156 |
Target: 5'- -gGGCCGgggguCCCGGggggcagCCGCGaCCcAGCGCg -3' miRNA: 3'- uaCCGGC-----GGGCCa------GGUGC-GGaUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33974 | 0.67 | 0.499538 |
Target: 5'- cGUGGuCCGCUgGGUCCGCugguCCgguGCACc -3' miRNA: 3'- -UACC-GGCGGgCCAGGUGc---GGau-CGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33537 | 0.66 | 0.56605 |
Target: 5'- -aGGUugUGCCCGGcuugCCugGCCcUGGUGCu -3' miRNA: 3'- uaCCG--GCGGGCCa---GGugCGG-AUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33433 | 0.67 | 0.518226 |
Target: 5'- --cGCCGCUCGGUCCugGggcuCCggguGCACc -3' miRNA: 3'- uacCGGCGGGCCAGGugC----GGau--CGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33359 | 0.67 | 0.499538 |
Target: 5'- gGUGGCCGCCggugGGUCCGCcggGCCgcuGCc- -3' miRNA: 3'- -UACCGGCGGg---CCAGGUG---CGGau-CGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33237 | 0.67 | 0.499538 |
Target: 5'- gGUGGCCGCCggcgGGUCCGCcggGCCgcuGCc- -3' miRNA: 3'- -UACCGGCGGg---CCAGGUG---CGGau-CGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33187 | 0.71 | 0.319016 |
Target: 5'- --cGCCGCUCGGUCCugGgCCUccgGGUGCu -3' miRNA: 3'- uacCGGCGGGCCAGGugC-GGA---UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 32872 | 0.7 | 0.378696 |
Target: 5'- -gGGCggCGCgaGGUCCcUGCCUGGCACc -3' miRNA: 3'- uaCCG--GCGggCCAGGuGCGGAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 28575 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 25497 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 24057 | 0.69 | 0.394742 |
Target: 5'- -cGGCCccgagccagGCCCGGgcUCUACGC-UGGCGCg -3' miRNA: 3'- uaCCGG---------CGGGCC--AGGUGCGgAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 22419 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 21622 | 0.69 | 0.402928 |
Target: 5'- gAUGGCCGaggaCCCGGcCUACGCggagcGGCACg -3' miRNA: 3'- -UACCGGC----GGGCCaGGUGCGga---UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 20943 | 0.67 | 0.518226 |
Target: 5'- cUGGCC-CCCacucCCACGCCUGGgCGCc -3' miRNA: 3'- uACCGGcGGGcca-GGUGCGGAUC-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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