Results 61 - 80 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29047 | 3' | -63 | NC_006146.1 | + | 135419 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 135790 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33537 | 0.66 | 0.56605 |
Target: 5'- -aGGUugUGCCCGGcuugCCugGCCcUGGUGCu -3' miRNA: 3'- uaCCG--GCGGGCCa---GGugCGG-AUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 48227 | 0.66 | 0.56605 |
Target: 5'- cUGGCgCGCCUGGgugagcgCCGCGCggAGgGCc -3' miRNA: 3'- uACCG-GCGGGCCa------GGUGCGgaUCgUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 60007 | 0.66 | 0.56605 |
Target: 5'- -aGGCCaacgcgGCCCcGUCCcCGCCU-GCGCc -3' miRNA: 3'- uaCCGG------CGGGcCAGGuGCGGAuCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 156358 | 0.66 | 0.574791 |
Target: 5'- -cGGCCcagcagcuccaggGCCCGGUCCAgGCuCUccAGCc- -3' miRNA: 3'- uaCCGG-------------CGGGCCAGGUgCG-GA--UCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 57150 | 0.66 | 0.585516 |
Target: 5'- gGUGGCCGaCCGccgcuUCCACGCCUuccuCACc -3' miRNA: 3'- -UACCGGCgGGCc----AGGUGCGGAuc--GUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 123611 | 0.66 | 0.585516 |
Target: 5'- uUGGCCaGCCagcggaGGUCCACGC--AGC-Cg -3' miRNA: 3'- uACCGG-CGGg-----CCAGGUGCGgaUCGuG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 124130 | 0.66 | 0.585516 |
Target: 5'- cGUGGCUGUgCGGUggCGCGUUUGGCAg -3' miRNA: 3'- -UACCGGCGgGCCAg-GUGCGGAUCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 135140 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 137913 | 0.66 | 0.614934 |
Target: 5'- -gGGCCGgggguUCCGGgggcagCCGCGaCCcAGCGCg -3' miRNA: 3'- uaCCGGC-----GGGCCa-----GGUGC-GGaUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 41590 | 0.66 | 0.614934 |
Target: 5'- cUGGCCgaggcggagagGCCCGGggggcuggUCCGCuggGCCcgGGCGCa -3' miRNA: 3'- uACCGG-----------CGGGCC--------AGGUG---CGGa-UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 136162 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 136441 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 137091 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 137370 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 137556 | 0.66 | 0.595299 |
Target: 5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3' miRNA: 3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 155566 | 0.66 | 0.595299 |
Target: 5'- -gGGCuCGCgCGGggcgCC-CGCCaggGGCACa -3' miRNA: 3'- uaCCG-GCGgGCCa---GGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 169755 | 0.66 | 0.595299 |
Target: 5'- -gGGCgGCCCGGggacCCuCGCgggGGCACc -3' miRNA: 3'- uaCCGgCGGGCCa---GGuGCGga-UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 68111 | 0.66 | 0.605107 |
Target: 5'- -gGGCgGCcagCCGGUCCGCGgUgagcGGCGCc -3' miRNA: 3'- uaCCGgCG---GGCCAGGUGCgGa---UCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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