miRNA display CGI


Results 101 - 120 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 103821 0.7 0.370839
Target:  5'- gGUGGCCGCCgaccccuucuCGG-CC-CGUCUGGCAg -3'
miRNA:   3'- -UACCGGCGG----------GCCaGGuGCGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 40374 0.7 0.370839
Target:  5'- -aGGCCcCCUGGUCgC-CGCCcGGCGCg -3'
miRNA:   3'- uaCCGGcGGGCCAG-GuGCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 106037 0.7 0.340539
Target:  5'- cGUGGCCGCCCa-UCCGgacauuggaGCCUGGCAg -3'
miRNA:   3'- -UACCGGCGGGccAGGUg--------CGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 103571 0.7 0.340539
Target:  5'- -gGGCuCGCCCGGgccugggCCGgGCUcAGCGCg -3'
miRNA:   3'- uaCCG-GCGGGCCa------GGUgCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 9462 0.71 0.319016
Target:  5'- gGUGGgCGCggGGUCCGCGCCcucUGGCAUc -3'
miRNA:   3'- -UACCgGCGggCCAGGUGCGG---AUCGUG- -5'
29047 3' -63 NC_006146.1 + 15415 0.73 0.232154
Target:  5'- gGUGGCCucagaggggcugGCCCGGcugcagUCC-UGCCUGGCGCa -3'
miRNA:   3'- -UACCGG------------CGGGCC------AGGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 3027 0.75 0.18749
Target:  5'- -gGGCCGcCCCGGggcucccCCGCGCCgaucugAGCGCc -3'
miRNA:   3'- uaCCGGC-GGGCCa------GGUGCGGa-----UCGUG- -5'
29047 3' -63 NC_006146.1 + 2095 0.75 0.18749
Target:  5'- -gGGCCGcCCCGGggcucccCCGCGCCgaucugAGCGCc -3'
miRNA:   3'- uaCCGGC-GGGCCa------GGUGCGGa-----UCGUG- -5'
29047 3' -63 NC_006146.1 + 1163 0.75 0.18749
Target:  5'- -gGGCCGcCCCGGggcucccCCGCGCCgaucugAGCGCc -3'
miRNA:   3'- uaCCGGC-GGGCCa------GGUGCGGa-----UCGUG- -5'
29047 3' -63 NC_006146.1 + 32872 0.7 0.378696
Target:  5'- -gGGCggCGCgaGGUCCcUGCCUGGCACc -3'
miRNA:   3'- uaCCG--GCGggCCAGGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 39403 0.7 0.378696
Target:  5'- -gGGCCcuuuCCCGGUCgAUcCCUGGCACc -3'
miRNA:   3'- uaCCGGc---GGGCCAGgUGcGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 125330 0.67 0.518226
Target:  5'- -aGGCCGCCUGG-CUGCGCg-AGCu- -3'
miRNA:   3'- uaCCGGCGGGCCaGGUGCGgaUCGug -5'
29047 3' -63 NC_006146.1 + 124781 0.67 0.518226
Target:  5'- -cGGCCaggGCCCGGg-CAUGCCUGcugcugcucGCGCg -3'
miRNA:   3'- uaCCGG---CGGGCCagGUGCGGAU---------CGUG- -5'
29047 3' -63 NC_006146.1 + 20943 0.67 0.518226
Target:  5'- cUGGCC-CCCacucCCACGCCUGGgCGCc -3'
miRNA:   3'- uACCGGcGGGcca-GGUGCGGAUC-GUG- -5'
29047 3' -63 NC_006146.1 + 165954 0.68 0.490307
Target:  5'- cGUGGCC-CCUGGUCCccgGgGCacagAGCACg -3'
miRNA:   3'- -UACCGGcGGGCCAGG---UgCGga--UCGUG- -5'
29047 3' -63 NC_006146.1 + 40651 0.68 0.481156
Target:  5'- cAUGGUgGCCCGGuUCCugGagaCUGGUg- -3'
miRNA:   3'- -UACCGgCGGGCC-AGGugCg--GAUCGug -5'
29047 3' -63 NC_006146.1 + 72455 0.68 0.477518
Target:  5'- cUGGCC-CCCGGgCgGCGCCgaaaccgguucugGGCGCu -3'
miRNA:   3'- uACCGGcGGGCCaGgUGCGGa------------UCGUG- -5'
29047 3' -63 NC_006146.1 + 126888 0.68 0.463108
Target:  5'- -cGGCCGCCCccUCCcCGCCgcGCAa -3'
miRNA:   3'- uaCCGGCGGGccAGGuGCGGauCGUg -5'
29047 3' -63 NC_006146.1 + 123905 0.69 0.394742
Target:  5'- -gGGCCGCugCCGGUCCgACGggcgcaauuCCUGGCGg -3'
miRNA:   3'- uaCCGGCG--GGCCAGG-UGC---------GGAUCGUg -5'
29047 3' -63 NC_006146.1 + 24057 0.69 0.394742
Target:  5'- -cGGCCccgagccagGCCCGGgcUCUACGC-UGGCGCg -3'
miRNA:   3'- uaCCGG---------CGGGCC--AGGUGCGgAUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.