miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 128169 0.67 0.536231
Target:  5'- -cGGCagcacCGCCCGGaUCCGCGgCUgccagcccgagcgGGCGCu -3'
miRNA:   3'- uaCCG-----GCGGGCC-AGGUGCgGA-------------UCGUG- -5'
29047 3' -63 NC_006146.1 + 121751 0.67 0.537185
Target:  5'- -aGGCUGCCCuGGaacCCguGCGCCUGGUg- -3'
miRNA:   3'- uaCCGGCGGG-CCa--GG--UGCGGAUCGug -5'
29047 3' -63 NC_006146.1 + 122572 0.67 0.546755
Target:  5'- cUGGaCGCCUGGcCCAccacCGCC-AGCACc -3'
miRNA:   3'- uACCgGCGGGCCaGGU----GCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 42790 0.67 0.546755
Target:  5'- cGUGGCCGCCuCGG-CCAgG-UUGGCGg -3'
miRNA:   3'- -UACCGGCGG-GCCaGGUgCgGAUCGUg -5'
29047 3' -63 NC_006146.1 + 116875 0.66 0.556378
Target:  5'- cAUGGCCGCCC--UCCggagGCGCCaccUGGUGCc -3'
miRNA:   3'- -UACCGGCGGGccAGG----UGCGG---AUCGUG- -5'
29047 3' -63 NC_006146.1 + 13427 0.66 0.56605
Target:  5'- -aGGcCCGCCCGGUCauCACGCU--GCcCg -3'
miRNA:   3'- uaCC-GGCGGGCCAG--GUGCGGauCGuG- -5'
29047 3' -63 NC_006146.1 + 117156 0.66 0.56605
Target:  5'- --cGCCGCCC-GUCUuCGCCccGGCGCa -3'
miRNA:   3'- uacCGGCGGGcCAGGuGCGGa-UCGUG- -5'
29047 3' -63 NC_006146.1 + 16190 0.66 0.585516
Target:  5'- cUGGCCGCCCuGGUggGCuGCaucugGGCGCa -3'
miRNA:   3'- uACCGGCGGG-CCAggUG-CGga---UCGUG- -5'
29047 3' -63 NC_006146.1 + 40976 0.66 0.585516
Target:  5'- -aGaCCGCCgUGGUgCCGCGCC-GGCGCc -3'
miRNA:   3'- uaCcGGCGG-GCCA-GGUGCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 19341 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 22419 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 25497 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 28575 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 16263 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 13185 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 54782 0.71 0.326075
Target:  5'- -gGGCCGCCagGGagCGCGCCUugGGCAg -3'
miRNA:   3'- uaCCGGCGGg-CCagGUGCGGA--UCGUg -5'
29047 3' -63 NC_006146.1 + 33187 0.71 0.319016
Target:  5'- --cGCCGCUCGGUCCugGgCCUccgGGUGCu -3'
miRNA:   3'- uacCGGCGGGCCAGGugC-GGA---UCGUG- -5'
29047 3' -63 NC_006146.1 + 92994 0.71 0.312073
Target:  5'- -aGGCCGCCCGcccCUGCGCCUguuaAGCAg -3'
miRNA:   3'- uaCCGGCGGGCca-GGUGCGGA----UCGUg -5'
29047 3' -63 NC_006146.1 + 67207 0.73 0.232154
Target:  5'- cUGGCCGUggCCGGUcgCCugGCCggccaGGCACa -3'
miRNA:   3'- uACCGGCG--GGCCA--GGugCGGa----UCGUG- -5'
29047 3' -63 NC_006146.1 + 137913 0.66 0.614934
Target:  5'- -gGGCCGgggguUCCGGgggcagCCGCGaCCcAGCGCg -3'
miRNA:   3'- uaCCGGC-----GGGCCa-----GGUGC-GGaUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.