Results 61 - 80 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29047 | 3' | -63 | NC_006146.1 | + | 105377 | 0.67 | 0.508846 |
Target: 5'- -gGGCCaCCaGGUCU-CGCUUAGCACu -3' miRNA: 3'- uaCCGGcGGgCCAGGuGCGGAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 55475 | 0.67 | 0.512589 |
Target: 5'- gAUGGCCgcgggcgagaacgagGCCCGGccgCCAgcUGCCUccuGCACg -3' miRNA: 3'- -UACCGG---------------CGGGCCa--GGU--GCGGAu--CGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 44586 | 0.67 | 0.518226 |
Target: 5'- cUGGCC-CCCGGgCCGCuGCCUuucccguuGCAUg -3' miRNA: 3'- uACCGGcGGGCCaGGUG-CGGAu-------CGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33433 | 0.67 | 0.518226 |
Target: 5'- --cGCCGCUCGGUCCugGggcuCCggguGCACc -3' miRNA: 3'- uacCGGCGGGCCAGGugC----GGau--CGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 158828 | 0.68 | 0.472088 |
Target: 5'- -cGGCCgggGCCCGGcCCuCGCaaagcgAGCACa -3' miRNA: 3'- uaCCGG---CGGGCCaGGuGCGga----UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 47218 | 0.68 | 0.463108 |
Target: 5'- cUGGCCGCCUccgCCACGaucuugagCUGGCGCg -3' miRNA: 3'- uACCGGCGGGccaGGUGCg-------GAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 67207 | 0.73 | 0.232154 |
Target: 5'- cUGGCCGUggCCGGUcgCCugGCCggccaGGCACa -3' miRNA: 3'- uACCGGCG--GGCCA--GGugCGGa----UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 92994 | 0.71 | 0.312073 |
Target: 5'- -aGGCCGCCCGcccCUGCGCCUguuaAGCAg -3' miRNA: 3'- uaCCGGCGGGCca-GGUGCGGA----UCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33187 | 0.71 | 0.319016 |
Target: 5'- --cGCCGCUCGGUCCugGgCCUccgGGUGCu -3' miRNA: 3'- uacCGGCGGGCCAGGugC-GGA---UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 54782 | 0.71 | 0.326075 |
Target: 5'- -gGGCCGCCagGGagCGCGCCUugGGCAg -3' miRNA: 3'- uaCCGGCGGg-CCagGUGCGGA--UCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 13185 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 16263 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 19341 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 22419 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 25497 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 28575 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 45552 | 0.7 | 0.370839 |
Target: 5'- uUGGCCGCCCuGGccUCCGCGaggagCUcGCGCa -3' miRNA: 3'- uACCGGCGGG-CC--AGGUGCg----GAuCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 82093 | 0.69 | 0.428119 |
Target: 5'- -aGGCCcagccacaacauGCCCagcaGGcUCCACGCCcugUAGCACa -3' miRNA: 3'- uaCCGG------------CGGG----CC-AGGUGCGG---AUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 98320 | 0.69 | 0.436721 |
Target: 5'- cGUGGCCGUCUGGcaCgGgGCCgGGCGCg -3' miRNA: 3'- -UACCGGCGGGCCa-GgUgCGGaUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 98647 | 0.69 | 0.436721 |
Target: 5'- gAUGGCCaucagcagacaGCCUGGUCCccgUGCCUucacGCGCa -3' miRNA: 3'- -UACCGG-----------CGGGCCAGGu--GCGGAu---CGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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