Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29047 | 5' | -57.1 | NC_006146.1 | + | 86563 | 1.06 | 0.003644 |
Target: 5'- uAGGUGUAGGCACGCACCCGACAGUGUu -3' miRNA: 3'- -UCCACAUCCGUGCGUGGGCUGUCACA- -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 126183 | 0.74 | 0.468044 |
Target: 5'- gGGGgccaGUGGGCAgGCACCUGAUAGa-- -3' miRNA: 3'- -UCCa---CAUCCGUgCGUGGGCUGUCaca -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 21247 | 0.72 | 0.534887 |
Target: 5'- -cGUGcAGGCGCGCugCCGGCGcGUGc -3' miRNA: 3'- ucCACaUCCGUGCGugGGCUGU-CACa -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 75371 | 0.7 | 0.695656 |
Target: 5'- aGGGacccUGgccAGGCGcCGCACCCGACAGc-- -3' miRNA: 3'- -UCC----ACa--UCCGU-GCGUGGGCUGUCaca -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 94403 | 0.69 | 0.715493 |
Target: 5'- cAGGUGUGGGC-CGUgagGCuuGGCAGg-- -3' miRNA: 3'- -UCCACAUCCGuGCG---UGggCUGUCaca -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 149104 | 0.69 | 0.715493 |
Target: 5'- cGG---GGGCGCGCGCCCGGCAu--- -3' miRNA: 3'- uCCacaUCCGUGCGUGGGCUGUcaca -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 50788 | 0.68 | 0.78225 |
Target: 5'- uGGUGUGGGCACacggGCGUCCGuACGGUc- -3' miRNA: 3'- uCCACAUCCGUG----CGUGGGC-UGUCAca -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 109023 | 0.68 | 0.791329 |
Target: 5'- aGGGUG-AGGCAUGCcucCCCaGAC-GUGUa -3' miRNA: 3'- -UCCACaUCCGUGCGu--GGG-CUGuCACA- -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 30146 | 0.67 | 0.809056 |
Target: 5'- gGGGUGggcauGGcCACGCAUCCGAgAGcGg -3' miRNA: 3'- -UCCACau---CC-GUGCGUGGGCUgUCaCa -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 70565 | 0.67 | 0.809056 |
Target: 5'- uGGGuUGUGGGCAuCGUGCCCGucCGGg-- -3' miRNA: 3'- -UCC-ACAUCCGU-GCGUGGGCu-GUCaca -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 74675 | 0.67 | 0.817688 |
Target: 5'- -----gGGGCAgGUACUCGACGGUGa -3' miRNA: 3'- uccacaUCCGUgCGUGGGCUGUCACa -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 104440 | 0.67 | 0.826154 |
Target: 5'- aAGGUGgacagGGGCgGCGCcCUCGGCAGg-- -3' miRNA: 3'- -UCCACa----UCCG-UGCGuGGGCUGUCaca -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 134377 | 0.67 | 0.834447 |
Target: 5'- aAGGUGUGGGCACuguaGCACCCu------- -3' miRNA: 3'- -UCCACAUCCGUG----CGUGGGcugucaca -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 167761 | 0.67 | 0.84256 |
Target: 5'- aGGGgccggGUGGGCGCGCaugGCUCGAgacgcaCGGUGc -3' miRNA: 3'- -UCCa----CAUCCGUGCG---UGGGCU------GUCACa -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 89742 | 0.67 | 0.850485 |
Target: 5'- cAGGUGgu-GCAuCGgGCuCCGGCAGUGg -3' miRNA: 3'- -UCCACaucCGU-GCgUG-GGCUGUCACa -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 91780 | 0.66 | 0.873071 |
Target: 5'- gGGGUGccGuGCugGCACCCG-CGGg-- -3' miRNA: 3'- -UCCACauC-CGugCGUGGGCuGUCaca -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 83775 | 0.66 | 0.880183 |
Target: 5'- uGGUGggAGGU-CGCAgucgacCCCGAUGGUGUu -3' miRNA: 3'- uCCACa-UCCGuGCGU------GGGCUGUCACA- -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 45885 | 0.66 | 0.88708 |
Target: 5'- gGGGUuccGUAGgGCAUgagauuuucaGCGCCCGGcCGGUGa -3' miRNA: 3'- -UCCA---CAUC-CGUG----------CGUGGGCU-GUCACa -5' |
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29047 | 5' | -57.1 | NC_006146.1 | + | 65451 | 0.66 | 0.893755 |
Target: 5'- gAGGagGUGGGCACGacCACgCUGGCGGgcUGUg -3' miRNA: 3'- -UCCa-CAUCCGUGC--GUG-GGCUGUC--ACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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