miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29048 3' -59.6 NC_006146.1 + 137767 0.66 0.813507
Target:  5'- cCCACCCGgaGCggggcaGCGGCCCGg--- -3'
miRNA:   3'- cGGUGGGUgaCGag----UGCCGGGUgucc -5'
29048 3' -59.6 NC_006146.1 + 114548 0.66 0.813507
Target:  5'- cGCCACCaCGCcuacuaccUGCUCcggGCGGCCUccuucucgcggcGCAGc -3'
miRNA:   3'- -CGGUGG-GUG--------ACGAG---UGCCGGG------------UGUCc -5'
29048 3' -59.6 NC_006146.1 + 137684 0.66 0.813507
Target:  5'- gGCCACCCgGCUGC-CcCGGagCAcCAGGa -3'
miRNA:   3'- -CGGUGGG-UGACGaGuGCCggGU-GUCC- -5'
29048 3' -59.6 NC_006146.1 + 55953 0.66 0.813506
Target:  5'- uGCCcCCCGCca-UCGCcGCCCAgGGGu -3'
miRNA:   3'- -CGGuGGGUGacgAGUGcCGGGUgUCC- -5'
29048 3' -59.6 NC_006146.1 + 87713 0.66 0.812665
Target:  5'- aGCCACCCucucccaGCUGCUgCACcuugaaaucaaGGCCCucugugGCuGGa -3'
miRNA:   3'- -CGGUGGG-------UGACGA-GUG-----------CCGGG------UGuCC- -5'
29048 3' -59.6 NC_006146.1 + 75174 0.66 0.812665
Target:  5'- aGCCcccCCCACUGggCAUuuuguuaGGCCCugGGa -3'
miRNA:   3'- -CGGu--GGGUGACgaGUG-------CCGGGugUCc -5'
29048 3' -59.6 NC_006146.1 + 42648 0.66 0.812665
Target:  5'- gGCCGCgUguACUGCUCcaacuGCGGCUCGCccgcgguGGGc -3'
miRNA:   3'- -CGGUGgG--UGACGAG-----UGCCGGGUG-------UCC- -5'
29048 3' -59.6 NC_006146.1 + 10374 0.66 0.805022
Target:  5'- aCCACuacgaCUACUGgUCGCGGCUCAgGGu -3'
miRNA:   3'- cGGUG-----GGUGACgAGUGCCGGGUgUCc -5'
29048 3' -59.6 NC_006146.1 + 90820 0.66 0.805022
Target:  5'- cGCCACCCaggcGCUGUgCugGGaCCGCGu- -3'
miRNA:   3'- -CGGUGGG----UGACGaGugCCgGGUGUcc -5'
29048 3' -59.6 NC_006146.1 + 102787 0.66 0.805022
Target:  5'- cGCCGcuCCCGCggaccgGCUgGCcGCCCACcuGGa -3'
miRNA:   3'- -CGGU--GGGUGa-----CGAgUGcCGGGUGu-CC- -5'
29048 3' -59.6 NC_006146.1 + 69451 0.66 0.805021
Target:  5'- cCCACCU-CUGCgccaccugCACGGCUUAacCAGGa -3'
miRNA:   3'- cGGUGGGuGACGa-------GUGCCGGGU--GUCC- -5'
29048 3' -59.6 NC_006146.1 + 130445 0.66 0.805021
Target:  5'- uUCACCCACcaggccauUGCcgCACccGCCUACGGGg -3'
miRNA:   3'- cGGUGGGUG--------ACGa-GUGc-CGGGUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 102474 0.66 0.805021
Target:  5'- aGCCGgCCGCggcGUUCAgGGUCuCGCGGa -3'
miRNA:   3'- -CGGUgGGUGa--CGAGUgCCGG-GUGUCc -5'
29048 3' -59.6 NC_006146.1 + 3429 0.66 0.805021
Target:  5'- uGCCAauaCUACgugcuggGCUcCACGGuCCCGCucGGGg -3'
miRNA:   3'- -CGGUg--GGUGa------CGA-GUGCC-GGGUG--UCC- -5'
29048 3' -59.6 NC_006146.1 + 117156 0.66 0.804165
Target:  5'- cGCCGCCCGuCUucgccccggcgcaGC-CGCGGCUCccggagaggACGGGg -3'
miRNA:   3'- -CGGUGGGU-GA-------------CGaGUGCCGGG---------UGUCC- -5'
29048 3' -59.6 NC_006146.1 + 151908 0.66 0.803307
Target:  5'- gGCC-CCCACUggggucugGCUC-CGGCCCugccgcccucucUAGGg -3'
miRNA:   3'- -CGGuGGGUGA--------CGAGuGCCGGGu-----------GUCC- -5'
29048 3' -59.6 NC_006146.1 + 170019 0.66 0.79986
Target:  5'- gGCCuuccCCCGuCUGCUCccGCGGCCagucccuggauguCGGGg -3'
miRNA:   3'- -CGGu---GGGU-GACGAG--UGCCGGgu-----------GUCC- -5'
29048 3' -59.6 NC_006146.1 + 167223 0.66 0.79986
Target:  5'- gGCCuuccCCCGuCUGCUCccGCGGCCagucccuggauguCGGGg -3'
miRNA:   3'- -CGGu---GGGU-GACGAG--UGCCGGgu-----------GUCC- -5'
29048 3' -59.6 NC_006146.1 + 168155 0.66 0.79986
Target:  5'- gGCCuuccCCCGuCUGCUCccGCGGCCagucccuggauguCGGGg -3'
miRNA:   3'- -CGGu---GGGU-GACGAG--UGCCGGgu-----------GUCC- -5'
29048 3' -59.6 NC_006146.1 + 169087 0.66 0.79986
Target:  5'- gGCCuuccCCCGuCUGCUCccGCGGCCagucccuggauguCGGGg -3'
miRNA:   3'- -CGGu---GGGU-GACGAG--UGCCGGgu-----------GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.