miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29048 3' -59.6 NC_006146.1 + 55953 0.66 0.813506
Target:  5'- uGCCcCCCGCca-UCGCcGCCCAgGGGu -3'
miRNA:   3'- -CGGuGGGUGacgAGUGcCGGGUgUCC- -5'
29048 3' -59.6 NC_006146.1 + 83601 0.66 0.787622
Target:  5'- gGCUaugGCUCGCUGCUCAU--CCUugGGGg -3'
miRNA:   3'- -CGG---UGGGUGACGAGUGccGGGugUCC- -5'
29048 3' -59.6 NC_006146.1 + 35970 0.66 0.786737
Target:  5'- aCCugCCGUUGCgCAgGGCCCaaugucaGCGGGa -3'
miRNA:   3'- cGGugGGUGACGaGUgCCGGG-------UGUCC- -5'
29048 3' -59.6 NC_006146.1 + 41042 0.66 0.778722
Target:  5'- cCCcCCCGuCcGCg-GCGGCCCugGGGg -3'
miRNA:   3'- cGGuGGGU-GaCGagUGCCGGGugUCC- -5'
29048 3' -59.6 NC_006146.1 + 54407 0.66 0.778722
Target:  5'- -aCGCCCACaUGU--GCGGCCUGgGGGu -3'
miRNA:   3'- cgGUGGGUG-ACGagUGCCGGGUgUCC- -5'
29048 3' -59.6 NC_006146.1 + 126605 0.66 0.774226
Target:  5'- nGCC-CCCACUaccgguuugGCgguggucggugggCACaccccggGGCCCGCAGGg -3'
miRNA:   3'- -CGGuGGGUGA---------CGa------------GUG-------CCGGGUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 112484 0.66 0.7697
Target:  5'- cCCACCCcgGCgcGCUCauagagauaGCGGUCCAgGGGc -3'
miRNA:   3'- cGGUGGG--UGa-CGAG---------UGCCGGGUgUCC- -5'
29048 3' -59.6 NC_006146.1 + 157451 0.66 0.7697
Target:  5'- gGCCACCCggGCUGC-CGgGGUCCcuccgGCuGGc -3'
miRNA:   3'- -CGGUGGG--UGACGaGUgCCGGG-----UGuCC- -5'
29048 3' -59.6 NC_006146.1 + 154373 0.66 0.7697
Target:  5'- gGCCACCCggGCUGC-CGgGGUCCcuccgGCuGGc -3'
miRNA:   3'- -CGGUGGG--UGACGaGUgCCGGG-----UGuCC- -5'
29048 3' -59.6 NC_006146.1 + 23157 0.66 0.787622
Target:  5'- cGCUugCaCAgagucGCUCGCGGCCCGCu-- -3'
miRNA:   3'- -CGGugG-GUga---CGAGUGCCGGGUGucc -5'
29048 3' -59.6 NC_006146.1 + 73581 0.66 0.787622
Target:  5'- cGCCAUCCuCUcCUCcgguCGaGCUCACGGGg -3'
miRNA:   3'- -CGGUGGGuGAcGAGu---GC-CGGGUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 36958 0.66 0.793774
Target:  5'- uGgCAgUCACUGCgUCacuguaggugaacuGCGGCCCACcGGg -3'
miRNA:   3'- -CgGUgGGUGACG-AG--------------UGCCGGGUGuCC- -5'
29048 3' -59.6 NC_006146.1 + 114548 0.66 0.813507
Target:  5'- cGCCACCaCGCcuacuaccUGCUCcggGCGGCCUccuucucgcggcGCAGc -3'
miRNA:   3'- -CGGUGG-GUG--------ACGAG---UGCCGGG------------UGUCc -5'
29048 3' -59.6 NC_006146.1 + 137684 0.66 0.813507
Target:  5'- gGCCACCCgGCUGC-CcCGGagCAcCAGGa -3'
miRNA:   3'- -CGGUGGG-UGACGaGuGCCggGU-GUCC- -5'
29048 3' -59.6 NC_006146.1 + 102787 0.66 0.805022
Target:  5'- cGCCGcuCCCGCggaccgGCUgGCcGCCCACcuGGa -3'
miRNA:   3'- -CGGU--GGGUGa-----CGAgUGcCGGGUGu-CC- -5'
29048 3' -59.6 NC_006146.1 + 90820 0.66 0.805022
Target:  5'- cGCCACCCaggcGCUGUgCugGGaCCGCGu- -3'
miRNA:   3'- -CGGUGGG----UGACGaGugCCgGGUGUcc -5'
29048 3' -59.6 NC_006146.1 + 10374 0.66 0.805022
Target:  5'- aCCACuacgaCUACUGgUCGCGGCUCAgGGu -3'
miRNA:   3'- cGGUG-----GGUGACgAGUGCCGGGUgUCc -5'
29048 3' -59.6 NC_006146.1 + 117156 0.66 0.804165
Target:  5'- cGCCGCCCGuCUucgccccggcgcaGC-CGCGGCUCccggagaggACGGGg -3'
miRNA:   3'- -CGGUGGGU-GA-------------CGaGUGCCGGG---------UGUCC- -5'
29048 3' -59.6 NC_006146.1 + 47946 0.66 0.796391
Target:  5'- cGCCuCCCGCUGCguggacaGGCUCGacaAGGu -3'
miRNA:   3'- -CGGuGGGUGACGagug---CCGGGUg--UCC- -5'
29048 3' -59.6 NC_006146.1 + 70672 0.66 0.79552
Target:  5'- cGCC-CCCACUGC-CACGGagcugaaCUuucugcgcugggaACGGGa -3'
miRNA:   3'- -CGGuGGGUGACGaGUGCCg------GG-------------UGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.