miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29048 3' -59.6 NC_006146.1 + 87153 1.12 0.000988
Target:  5'- gGCCACCCACUGCUCACGGCCCACAGGg -3'
miRNA:   3'- -CGGUGGGUGACGAGUGCCGGGUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 130843 0.8 0.153652
Target:  5'- cGCCGCCCACaugUGC-CAUGGCUCACAGc -3'
miRNA:   3'- -CGGUGGGUG---ACGaGUGCCGGGUGUCc -5'
29048 3' -59.6 NC_006146.1 + 8043 0.79 0.173698
Target:  5'- uGgCACCCGCUGgaCcCGGCCCugGGGg -3'
miRNA:   3'- -CgGUGGGUGACgaGuGCCGGGugUCC- -5'
29048 3' -59.6 NC_006146.1 + 76496 0.77 0.237002
Target:  5'- gGCCugCCAagcCUCACGGCCCACAc- -3'
miRNA:   3'- -CGGugGGUgacGAGUGCCGGGUGUcc -5'
29048 3' -59.6 NC_006146.1 + 166244 0.76 0.266088
Target:  5'- cCCACCCggcccaggacgGCgggguauaUGUUCugGGCCCGCAGGg -3'
miRNA:   3'- cGGUGGG-----------UG--------ACGAGugCCGGGUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 143570 0.76 0.272241
Target:  5'- cGCCACCCGCUGUUUuuggAgGGCCaguugaaGCAGGc -3'
miRNA:   3'- -CGGUGGGUGACGAG----UgCCGGg------UGUCC- -5'
29048 3' -59.6 NC_006146.1 + 117907 0.76 0.278508
Target:  5'- aCC-CCCGCgGC-CACGGCCgGCAGGu -3'
miRNA:   3'- cGGuGGGUGaCGaGUGCCGGgUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 127452 0.76 0.278509
Target:  5'- uGCCGCuCCAgaUGUg-GCGGCCCGCAGGc -3'
miRNA:   3'- -CGGUG-GGUg-ACGagUGCCGGGUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 126568 0.76 0.294017
Target:  5'- aGCCACCUgugcagaagcccccgGCUGC-CACGGCCC-CAGc -3'
miRNA:   3'- -CGGUGGG---------------UGACGaGUGCCGGGuGUCc -5'
29048 3' -59.6 NC_006146.1 + 40425 0.75 0.304725
Target:  5'- aGCCACCCGggGCggcaGCGGCCCcguagGCGGGu -3'
miRNA:   3'- -CGGUGGGUgaCGag--UGCCGGG-----UGUCC- -5'
29048 3' -59.6 NC_006146.1 + 20711 0.75 0.318528
Target:  5'- gGCCAUUaagaaGCUGCUgGCGGCCUGCgAGGa -3'
miRNA:   3'- -CGGUGGg----UGACGAgUGCCGGGUG-UCC- -5'
29048 3' -59.6 NC_006146.1 + 41577 0.75 0.325603
Target:  5'- gGCCGCCUACUgGCUgGCcgaggcggagaGGCCCGgGGGg -3'
miRNA:   3'- -CGGUGGGUGA-CGAgUG-----------CCGGGUgUCC- -5'
29048 3' -59.6 NC_006146.1 + 52946 0.74 0.340102
Target:  5'- cGCCGCCUaucccguuACcGUUCAUGGCCCuccGCGGGg -3'
miRNA:   3'- -CGGUGGG--------UGaCGAGUGCCGGG---UGUCC- -5'
29048 3' -59.6 NC_006146.1 + 116894 0.74 0.340102
Target:  5'- cGCCACCUGgUGC---CGGCCCugAGGg -3'
miRNA:   3'- -CGGUGGGUgACGaguGCCGGGugUCC- -5'
29048 3' -59.6 NC_006146.1 + 12774 0.74 0.362716
Target:  5'- aCCugCCGgacCUGgaCGCGGCCCuGCAGGg -3'
miRNA:   3'- cGGugGGU---GACgaGUGCCGGG-UGUCC- -5'
29048 3' -59.6 NC_006146.1 + 10806 0.72 0.427935
Target:  5'- gGUCGCCaCGCUgggcaccgGCUaCACGGgCCACAGGu -3'
miRNA:   3'- -CGGUGG-GUGA--------CGA-GUGCCgGGUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 126169 0.72 0.435697
Target:  5'- aGCCGCCCGCgGCcaccgcaUCAggcCGGCCaGCGGGg -3'
miRNA:   3'- -CGGUGGGUGaCG-------AGU---GCCGGgUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 126349 0.72 0.436564
Target:  5'- aGCCACCCGgaGCcC-CGGCCCcuuuucCAGGa -3'
miRNA:   3'- -CGGUGGGUgaCGaGuGCCGGGu-----GUCC- -5'
29048 3' -59.6 NC_006146.1 + 101481 0.71 0.481147
Target:  5'- cCCAUCCugUGCUCgguGGCCCugcucguCAGGa -3'
miRNA:   3'- cGGUGGGugACGAGug-CCGGGu------GUCC- -5'
29048 3' -59.6 NC_006146.1 + 102584 0.71 0.481148
Target:  5'- cGCCAUCCu---CUCGCGGCCCGaggAGGg -3'
miRNA:   3'- -CGGUGGGugacGAGUGCCGGGUg--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.